Gm5276 Pseudogene Detail

Summary

• Symbol
  Gm5276
• Name
  predicted gene 5276

• Feature Type
  pseudogene
• IDs
  MGI:3646382
  NCBI Gene: 383862
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:57269809-57270855 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 27.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646382	pseudogene	Chr3:57269670-57271035 (+)
129S1/SvImJ	ENSMUSG00200023575	pseudogene	Chr3:54140642-54141688 (+)
A/J	ENSMUSG00195033710	pseudogene	Chr3:54052532-54053550 (+)
AKR/J	ENSMUSG00220030120	pseudogene	Chr3:54110468-54111514 (+)
BALB/cJ	ENSMUSG00180026637	pseudogene	Chr3:54139013-54140059 (+)
C3H/HeJ	ENSMUSG00175008966	pseudogene	Chr3:53980478-53981524 (+)
C57BL/6NJ	ENSMUSG00215010467	pseudogene	Chr3:54422574-54423620 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210004031	pseudogene	Chr3:54096170-54097216 (+)
DBA/2J	ENSMUSG00185028788	pseudogene	Chr3:54264288-54265306 (+)
FVB/NJ	ENSMUSG00205003683	pseudogene	Chr3:53241788-53242806 (+)
JF1/MsJ	ENSUMUG00000004139	pseudogene	Chr3:53668676-53669710 (+)
LP/J	ENSMUSG00230004533	pseudogene	Chr3:56277445-56278491 (+)
NOD/ShiLtJ	ENSMUSG00190033970	pseudogene	Chr3:54455307-54456353 (+)
NZO/HlLtJ	ENSMUSG00225018585	pseudogene	Chr3:58889857-58890903 (+)
PWK/PhJ	ENSLUMG00010005424	pseudogene	Chr3:53778045-53779065 (+)
SPRET/EiJ	ENSMSPG00010007780	pseudogene	Chr3:54626089-54627102 (+)
WSB/EiJ	ENSIUOG00005009038	pseudogene	Chr3:54229292-54230310 (+)

Homology

• Gene Tree
  Gm5276
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5276
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000105452 (Evidence)
• NCBI Gene
  383862

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105452	Ensembl Gene Model | MGI Sequence Detail	1047	C57BL/6J
transcript	ENSMUST00000196683	Ensembl | MGI Sequence Detail	1047	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm5276:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29182	Chr3:57269662-57269673 (+)	-141 bp