Gm6729 Gene Detail

Summary

• Symbol
  Gm6729
• Name
  predicted gene 6729

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3646339
  NCBI Gene: 627035
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:86362161-86377447 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 42.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  515 from dbSNP Build 142
• Strain Annotations
  46

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646339	protein coding gene	Chr10:86362161-86377447 (-)
129S1/SvImJ	ENSMUSG00200029765	pseudogene	Chr10:82872477-82873928 (-)
129S1/SvImJ	ENSMUSG00200027096	protein coding gene	Chr10:82857890-82888210 (-)
129S1/SvImJ	ENSMUSG00200029821	lncRNA gene	Chr10:82858893-82868931 (-)
A/J	ENSMUSG00195022123	lncRNA gene	Chr10:83303984-83314022 (-)
A/J	ENSMUSG00195019580	protein coding gene	Chr10:83302981-83333310 (-)
A/J	ENSMUSG00195022049	pseudogene	Chr10:83317568-83319019 (-)
AKR/J	ENSMUSG00220020979	protein coding gene	Chr10:82905263-82935593 (-)
AKR/J	ENSMUSG00220022160	lncRNA gene	Chr10:82906266-82916304 (-)
AKR/J	ENSMUSG00220022116	pseudogene	Chr10:82919850-82921301 (-)
BALB/cJ	ENSMUSG00180035292	pseudogene	Chr10:83320674-83322125 (-)
BALB/cJ	ENSMUSG00180029721	protein coding gene	Chr10:83306087-83336417 (-)
BALB/cJ	ENSMUSG00180035384	lncRNA gene	Chr10:83307090-83317128 (-)
C3H/HeJ	ENSMUSG00175024521	pseudogene	Chr10:83210296-83211747 (-)
C3H/HeJ	ENSMUSG00175020959	protein coding gene	Chr10:83195709-83226038 (-)
C3H/HeJ	ENSMUSG00175024604	lncRNA gene	Chr10:83196712-83206750 (-)
C57BL/6NJ	ENSMUSG00215033384	pseudogene	Chr10:82867129-82868580 (-)
C57BL/6NJ	ENSMUSG00215033633	lncRNA gene	Chr10:82853545-82863583 (-)
C57BL/6NJ	ENSMUSG00215012965	protein coding gene	Chr10:82852542-82882872 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037929	pseudogene	Chr10:82629091-82630541 (-)
CAST/EiJ	ENSTCUG00005037970	lncRNA gene	Chr10:82615513-82625543 (-)
CBA/J	ENSMUSG00210032498	protein coding gene	Chr10:83037107-83067436 (-)
CBA/J	ENSMUSG00210036645	pseudogene	Chr10:83051694-83053145 (-)
CBA/J	ENSMUSG00210036796	lncRNA gene	Chr10:83038110-83048148 (-)
DBA/2J	ENSMUSG00185043160	lncRNA gene	Chr10:83255618-83265656 (-)
DBA/2J	ENSMUSG00185040714	protein coding gene	Chr10:83254615-83284945 (-)
DBA/2J	ENSMUSG00185043112	pseudogene	Chr10:83269202-83270653 (-)
FVB/NJ	ENSMUSG00205022593	pseudogene	Chr10:82930830-82932281 (-)
FVB/NJ	ENSMUSG00205022663	lncRNA gene	Chr10:82917134-82927166 (-)
JF1/MsJ	ENSUMUG00000028643	lncRNA gene	Chr10:84614144-84624179 (-)
JF1/MsJ	ENSUMUG00000028537	pseudogene	Chr10:84627843-84629294 (-)
LP/J	ENSMUSG00230017431	protein coding gene	Chr10:85140532-85170861 (-)
LP/J	ENSMUSG00230018372	lncRNA gene	Chr10:85141535-85151573 (-)
LP/J	ENSMUSG00230018560	pseudogene	Chr10:85155119-85156570 (-)
NOD/ShiLtJ	ENSMUSG00190016765	protein coding gene	Chr10:83288547-83318876 (-)
NOD/ShiLtJ	ENSMUSG00190019306	pseudogene	Chr10:83303134-83304585 (-)
NOD/ShiLtJ	ENSMUSG00190019357	lncRNA gene	Chr10:83289550-83299588 (-)
NZO/HlLtJ	ENSMUSG00225049998	protein coding gene	Chr10:89411773-89442102 (-)
NZO/HlLtJ	ENSMUSG00225053796	pseudogene	Chr10:89426360-89427811 (-)
NZO/HlLtJ	ENSMUSG00225053703	lncRNA gene	Chr10:89412776-89422814 (-)
PWK/PhJ	ENSLUMG00010023512	lncRNA gene	Chr10:82891158-82901203 (-)
PWK/PhJ	ENSLUMG00010023470	pseudogene	Chr10:82904750-82906201 (-)
SPRET/EiJ	ENSMSPG00010035639	lncRNA gene	Chr10:84369159-84380254 (-)
SPRET/EiJ	ENSMSPG00010035569	pseudogene	Chr10:84383779-84385230 (-)
WSB/EiJ	ENSIUOG00005037810	pseudogene	Chr10:83002019-83003470 (-)
WSB/EiJ	ENSIUOG00005037897	lncRNA gene	Chr10:82988433-82998473 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6729
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  77
• RefSeq
  25

• Ensembl
  ENSMUSG00000090816 (Evidence), ENSMUSG00000112586 (Evidence)
• NCBI Gene
  627035

Representative Sequences			Length	Strain/Species
genomic	627035	NCBI Gene Model | MGI Sequence Detail	15287	C57BL/6J
transcript	NR_169119	RefSeq | MGI Sequence Detail	6354	C57BL/6
polypeptide	NP_001371153	RefSeq | MGI Sequence Detail	493	C57BL/6

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87