Gm5200 Pseudogene Detail

Summary

• Symbol
  Gm5200
• Name
  predicted gene 5200

• Feature Type
  pseudogene
• IDs
  MGI:3646335
  NCBI Gene: 382807
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:117594372-117595611 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 65.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646335	pseudogene	Chr13:117594308-117595662 (-)
129S1/SvImJ	ENSMUSG00200003730	pseudogene	Chr13:112067505-112068744 (-)
A/J	ENSMUSG00195000984	pseudogene	Chr13:112556906-112558146 (-)
AKR/J	ENSMUSG00220033136	pseudogene	Chr13:110998103-110999343 (-)
BALB/cJ	ENSMUSG00180010948	pseudogene	Chr13:113150049-113151289 (-)
C3H/HeJ	ENSMUSG00175002425	pseudogene	Chr13:113243998-113245237 (-)
C57BL/6NJ	ENSMUSG00215000919	pseudogene	Chr13:113257153-113258392 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002628	pseudogene	Chr13:112291741-112292981 (-)
CBA/J	ENSMUSG00210017332	pseudogene	Chr13:112566303-112567543 (-)
DBA/2J	ENSMUSG00185030193	pseudogene	Chr13:116336884-116338123 (-)
FVB/NJ	ENSMUSG00205001295	pseudogene	Chr13:111988497-111989737 (-)
JF1/MsJ	ENSUMUG00000018151	pseudogene	Chr13:115780576-115781816 (-)
LP/J	ENSMUSG00230011878	pseudogene	Chr13:126535147-126536386 (-)
NOD/ShiLtJ	ENSMUSG00190009755	pseudogene	Chr13:112866061-112867301 (-)
NZO/HlLtJ	ENSMUSG00225031134	pseudogene	Chr13:118686184-118687423 (-)
PWK/PhJ	ENSLUMG00010008144	pseudogene	Chr13:111860174-111861414 (-)
SPRET/EiJ	ENSMSPG00010007118	pseudogene	Chr13:113673988-113675211 (-)
WSB/EiJ	ENSIUOG00005013199	pseudogene	Chr13:112025122-112026361 (-)

Homology

• Gene Tree
  Gm5200
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114358 (Evidence)
• NCBI Gene
  382807

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114358	Ensembl Gene Model | MGI Sequence Detail	1240	C57BL/6J
transcript	ENSMUST00000223786	Ensembl | MGI Sequence Detail	1240	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;