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Gm5477 Pseudogene Detail
Summary
  • Symbol
    Gm5477
  • Name
    predicted gene 5477
Location &
Maps
more
  • Sequence Map
    Chr15:101517309-101518914 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646317
 pseudogene Chr15:101517150-101518914 (+)
129S1/SvImJ ENSMUSG00200052339
 pseudogene Chr15:98732608-98737342 (+)
A/J ENSMUSG00195046598
 pseudogene Chr15:98611985-98613749 (+)
AKR/J ENSMUSG00220049476
 pseudogene Chr15:98596127-98597891 (+)
BALB/cJ ENSMUSG00180048759
 pseudogene Chr15:98502619-98507353 (+)
C3H/HeJ ENSMUSG00175049018
 pseudogene Chr15:98791991-98793755 (+)
C57BL/6NJ ENSMUSG00215051695
 pseudogene Chr15:98558002-98559766 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005048135
 pseudogene Chr15:98048450-98050214 (+)
CBA/J ENSMUSG00210032189
 pseudogene Chr15:98565154-98566918 (+)
DBA/2J ENSMUSG00185042585
 pseudogene Chr15:98602485-98604249 (+)
FVB/NJ ENSMUSG00205048596
 pseudogene Chr15:98306963-98308727 (+)
JF1/MsJ ENSUMUG00000057645
 pseudogene Chr15:98075997-98077761 (+)
LP/J ENSMUSG00230040227
 pseudogene Chr15:101956239-101960973 (+)
NOD/ShiLtJ ENSMUSG00190049123
 pseudogene Chr15:98541780-98543544 (+)
NZO/HlLtJ ENSMUSG00225028113
 pseudogene Chr15:102162526-102164290 (+)
PWK/PhJ ENSLUMG00010049805
 pseudogene Chr15:98288750-98290514 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005040513
 pseudogene Chr15:98697480-98702214 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    3 involving Gm5477
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 432986 NCBI Gene Model | MGI Sequence Detail 1606 C57BL/6J ±  kb
transcript NR_197397 RefSeq | MGI Sequence Detail 1556 C57BL/6  
For the selected sequence
References
more
  • Summaries
    All 31
    Phenotypes 26
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory