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Gbp11 Pseudogene Detail
Summary
  • Symbol
    Gbp11
  • Name
    guanylate binding protein 11
  • Synonyms
    Gm7141
Location &
Maps
more
  • Sequence Map
    Chr5:105470908-105494338 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 50.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    112 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646307
 polymorphic pseudogene Chr5:105470892-105494342 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0009930
 polymorphic pseudogene Chr5:103081528-103109101 (-)
AKR/J MGP_AKRJ_G0009913
 polymorphic pseudogene Chr5:106216769-106245654 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0009846
 polymorphic pseudogene Chr5:106910199-106951012 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010163
 polymorphic pseudogene Chr5:111642489-111671156 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0009664
 polymorphic pseudogene Chr5:105809221-105830843 (-)
CBA/J MGP_CBAJ_G0009820
 polymorphic pseudogene Chr5:115408239-115436725 (-)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0009866
 polymorphic pseudogene Chr5:101994774-102061060 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0009832
 polymorphic pseudogene Chr5:120193971-120444786 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010134
 polymorphic pseudogene Chr5:105990255-106012124 (-)
PWK/PhJ MGP_PWKPhJ_G0028649
 polymorphic pseudogene Chr5:101780710-101783434 (-)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    GBP6, guanylate binding protein family member 6
  • Vertebrate Orthologs
    7
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GBP6, guanylate binding protein family member 6
  • Links
    NCBI Gene ID: 163351
    neXtProt AC: NX_Q6ZN66
    UniProt: Q6ZN66

  • Chr Location
    1p22.2; chr1:89363877-89388160 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000092021 Ensembl Gene Model | MGI Sequence Detail 23431 C57BL/6J ±  kb
transcript ENSMUST00000100960 Ensembl | MGI Sequence Detail 2692 Not Applicable  
polypeptide ENSMUSP00000098520 Ensembl | MGI Sequence Detail 619 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR030386 GB1/RHD3-type guanine nucleotide-binding (G) domain
    IPR003191 Guanylate-binding protein/Atlastin, C-terminal
    IPR037684 Guanylate-binding protein, C-terminal
    IPR036543 Guanylate-binding protein, C-terminal domain superfamily
    IPR015894 Guanylate-binding protein, N-terminal
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/30/2023
MGI 6.22 		The Jackson Laboratory