Plp2rt Gene Detail

Summary

• Symbol
  Plp2rt
• Name
  proteolipid protein 2, retrotransposed
• Synonyms
  Gm6169, Prp2rt

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3646298
  NCBI Gene: 620648
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:97234716-97235745 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 50.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646298	protein coding gene	Chr13:97234716-97235848 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0025858	protein coding gene	Chr2:76188450-76189556 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0032891	protein coding gene	ChrX:1808702-1812076 (-)
CAST/EiJ	MGP_CASTEiJ_G0034500	protein coding gene	ChrX:2216344-2220328 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0035404	protein coding gene	ChrX:2281442-2284516 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035313	protein coding gene	ChrX:2438527-2440361 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0034039	protein coding gene	ChrX:2234474-2237568 (-)
WSB/EiJ	MGP_WSBEiJ_G0034623	protein coding gene	ChrX:2269815-2274389 (-)

Homology

• Human Ortholog
  PLP2, proteolipid protein 2

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  PLP2, proteolipid protein 2
  
• Synonyms
  A4, A4LSB
• Links
  HGNC:9087

  NCBI Gene ID: 5355

  UniProt: Q04941

  
  
• Chr Location
  Xp11.23; chrX:49171898-49175235 (+)  GRCh38

---

• MGI Vertebrate Homology
  Plp2rt stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: PLP2
• Gene Tree
  Plp2rt
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000057762 (Evidence)
• NCBI Gene
  620648

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000057762	Ensembl Gene Model | MGI Sequence Detail	1030	C57BL/6J
transcript	ENSMUST00000071118	Ensembl | MGI Sequence Detail	1030	Not Applicable
polypeptide	ENSMUSP00000132645	Ensembl | MGI Sequence Detail	152	Not Applicable

Other
Accession IDs

MGI:7484397, MGI:7716861

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;