Gm6312 Pseudogene Detail

Summary

• Symbol
  Gm6312
• Name
  predicted gene 6312

• Feature Type
  pseudogene
• IDs
  MGI:3646278
  NCBI Gene: 622318
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:82864497-82865690 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 35.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646278	pseudogene	Chr6:82864244-82865701 (-)
129S1/SvImJ	ENSMUSG00200012679	pseudogene	Chr6:79826499-79827692 (-)
A/J	ENSMUSG00195012335	pseudogene	Chr6:79510715-79511908 (-)
AKR/J	ENSMUSG00220002140	pseudogene	Chr6:78454142-78455335 (-)
BALB/cJ	ENSMUSG00180010461	pseudogene	Chr6:79886754-79887947 (-)
C3H/HeJ	ENSMUSG00175039013	pseudogene	Chr6:97522346-97523539 (+)
C57BL/6NJ	ENSMUSG00215015231	pseudogene	Chr6:79883948-79885141 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011960	pseudogene	Chr6:79027949-79029169 (-)
CAST/EiJ	ENSTCUG00005008668	pseudogene	Chr6:79895998-79897192 (-)
CBA/J	ENSMUSG00210011247	pseudogene	Chr6:79702357-79703550 (-)
DBA/2J	ENSMUSG00185000944	pseudogene	Chr6:80249394-80250587 (-)
FVB/NJ	ENSMUSG00205027839	pseudogene	Chr6:78928444-78929637 (-)
JF1/MsJ	ENSUMUG00000023312	pseudogene	Chr6:79303675-79304869 (-)
LP/J	ENSMUSG00230050604	pseudogene	Chr6:81383779-81384972 (-)
NOD/ShiLtJ	ENSMUSG00190001689	pseudogene	Chr6:79331620-79332813 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010006394	pseudogene	Chr6:78654601-78655795 (-)
SPRET/EiJ	ENSMSPG00010042855	pseudogene	Chr6:80808201-80809394 (-)
WSB/EiJ	ENSIUOG00005018788	pseudogene	Chr6:80269317-80270510 (-)

Homology

• Gene Tree
  Gm6312
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm6312
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000107401 (Evidence)
• NCBI Gene
  622318

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107401	Ensembl Gene Model | MGI Sequence Detail	1194	C57BL/6J
transcript	ENSMUST00000204060	Ensembl | MGI Sequence Detail	1194	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48