Gm5778 Pseudogene Detail

Summary

• Symbol
  Gm5778
• Name
  predicted gene 5778

• Feature Type
  pseudogene
• IDs
  MGI:3646275
  NCBI Gene: 544705
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:73037527-73038598 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 37.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646275	pseudogene	Chr10:73037360-73038598 (+)
129S1/SvImJ	ENSMUSG00200017649	pseudogene	Chr10:69736401-69737472 (+)
A/J	ENSMUSG00195005841	pseudogene	Chr10:70049764-70050835 (+)
AKR/J	ENSMUSG00220029614	pseudogene	Chr10:69696082-69697153 (+)
BALB/cJ	ENSMUSG00180007763	pseudogene	Chr10:70064337-70065408 (+)
C3H/HeJ	ENSMUSG00175012754	pseudogene	Chr10:69915308-69916379 (+)
C57BL/6NJ	ENSMUSG00215004137	pseudogene	Chr10:69673279-69674350 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009433	pseudogene	Chr10:67151826-67152920 (+)
CAST/EiJ	ENSTCUG00005027911	pseudogene	Chr10:69578458-69579510 (+)
CBA/J	ENSMUSG00210009951	pseudogene	Chr10:69779106-69780177 (+)
DBA/2J	ENSMUSG00185020529	pseudogene	Chr10:70134290-70135361 (+)
FVB/NJ	ENSMUSG00205007854	pseudogene	Chr10:69868526-69869597 (+)
JF1/MsJ	ENSUMUG00000055642	pseudogene	Chr10:71311780-71312851 (+)
LP/J	ENSMUSG00230051395	pseudogene	Chr10:71904054-71905125 (+)
NOD/ShiLtJ	ENSMUSG00190007971	pseudogene	Chr10:70121511-70122576 (+)
NZO/HlLtJ	ENSMUSG00225048677	pseudogene	Chr10:76200423-76201494 (+)
PWK/PhJ	ENSLUMG00010007794	pseudogene	Chr10:69718127-69719198 (+)
SPRET/EiJ	ENSMSPG00010047665	pseudogene	Chr10:71453856-71454922 (+)
WSB/EiJ	ENSIUOG00005034023	pseudogene	Chr10:69694438-69695503 (+)

Homology

• Gene Tree
  Gm5778
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5778
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000091825 (Evidence)
• NCBI Gene
  544705

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091825	Ensembl Gene Model | MGI Sequence Detail	1072	C57BL/6J
transcript	ENSMUST00000171003	Ensembl | MGI Sequence Detail	1072	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm5778:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94047	Chr10:73037357-73037359 (+)	-169 bp
Tssr94048	Chr10:73037788-73037820 (+)	277 bp
Tssr94049	Chr10:73037984-73037994 (+)	462 bp