Gm6799 Pseudogene Detail

Summary

• Symbol
  Gm6799
• Name
  predicted gene 6799

• Feature Type
  pseudogene
• IDs
  MGI:3646265
  NCBI Gene: 627858
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:53402273-53402845 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646265	pseudogene	Chr1:53402273-53402845 (+)
129S1/SvImJ	ENSMUSG00200018729	pseudogene	Chr1:50877390-50877962 (+)
A/J	ENSMUSG00195030968	pseudogene	Chr1:50777034-50777606 (+)
AKR/J	ENSMUSG00220042819	pseudogene	Chr1:50528328-50528900 (+)
BALB/cJ	ENSMUSG00180014383	pseudogene	Chr1:50703953-50704525 (+)
C3H/HeJ	ENSMUSG00175001186	pseudogene	Chr1:50803194-50803766 (+)
C57BL/6NJ	ENSMUSG00215035625	pseudogene	Chr1:50730644-50731216 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009092	pseudogene	Chr1:40758425-40767761 (-)
CAST/EiJ	ENSTCUG00005014208	pseudogene	Chr1:50627782-50628354 (+)
CBA/J	ENSMUSG00210054116	pseudogene	Chr1:50508549-50509121 (+)
DBA/2J	ENSMUSG00185054908	pseudogene	Chr1:51628159-51628731 (+)
FVB/NJ	ENSMUSG00205022051	pseudogene	Chr1:50468556-50469128 (+)
JF1/MsJ	ENSUMUG00000047141	pseudogene	Chr1:50587604-50588171 (+)
LP/J	ENSMUSG00230029295	pseudogene	Chr1:51624357-51624929 (+)
NOD/ShiLtJ	ENSMUSG00190042378	pseudogene	Chr1:50645109-50645681 (+)
NZO/HlLtJ	ENSMUSG00225009736	pseudogene	Chr1:54829048-54829620 (+)
PWK/PhJ	ENSLUMG00010002836	pseudogene	Chr1:50143621-50144193 (+)
SPRET/EiJ	ENSMSPG00010026095	pseudogene	Chr1:51882632-51883204 (+)
WSB/EiJ	ENSIUOG00005020750	pseudogene	Chr1:50333648-50334220 (+)

Homology

• Gene Tree
  Gm6799
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6799
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000099450 (Evidence)
• NCBI Gene
  627858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099450	Ensembl Gene Model | MGI Sequence Detail	573	C57BL/6J
transcript	ENSMUST00000186919	Ensembl | MGI Sequence Detail	573	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582