Gm8900 Pseudogene Detail

Summary

• Symbol
  Gm8900
• Name
  predicted gene 8900

• Feature Type
  pseudogene
• IDs
  MGI:3646243
  NCBI Gene: 667966
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:55760702-55761074 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 33.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646243	pseudogene	Chr16:55760687-55761098 (-)
129S1/SvImJ	ENSMUSG00200021341	pseudogene	Chr16:52661147-52661519 (-)
A/J	ENSMUSG00195025434	pseudogene	Chr16:52279662-52280034 (-)
AKR/J	ENSMUSG00220019800	pseudogene	Chr16:52654884-52655256 (-)
BALB/cJ	ENSMUSG00180024140	pseudogene	Chr16:52449146-52449518 (-)
C3H/HeJ	ENSMUSG00175017733	pseudogene	Chr16:52745050-52745422 (-)
C57BL/6NJ	ENSMUSG00215025250	pseudogene	Chr16:52566233-52566605 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014533	pseudogene	Chr16:52797451-52797823 (-)
CBA/J	ENSMUSG00210019787	pseudogene	Chr16:52774059-52774335 (-)
DBA/2J	ENSMUSG00185025608	pseudogene	Chr16:52629178-52629550 (-)
FVB/NJ	ENSMUSG00205010864	pseudogene	Chr16:52418252-52418624 (-)
JF1/MsJ	ENSUMUG00000026073	pseudogene	Chr16:52886296-52886572 (-)
LP/J	ENSMUSG00230008747	pseudogene	Chr16:55190142-55190514 (-)
NOD/ShiLtJ	ENSMUSG00190007458	pseudogene	Chr16:52667329-52667701 (-)
NZO/HlLtJ	ENSMUSG00225026081	pseudogene	Chr16:58289027-58289399 (-)
PWK/PhJ	ENSLUMG00010012268	pseudogene	Chr16:52688399-52688771 (-)
SPRET/EiJ	ENSMSPG00010001660	pseudogene	Chr16:53144936-53145308 (-)
WSB/EiJ	ENSIUOG00005009361	pseudogene	Chr16:52880594-52880966 (-)

Homology

• Gene Tree
  Gm8900
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000116653 (Evidence)
• NCBI Gene
  667966

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116653	Ensembl Gene Model | MGI Sequence Detail	373	C57BL/6J
transcript	ENSMUST00000231662	Ensembl | MGI Sequence Detail	373	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8900:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141545	Chr16:55761095-55761098 (-)	-23 bp