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Clrn2 Gene Detail
Summary
  • Symbol
    Clrn2
  • Name
    clarin 2
  • Synonyms
    EG624224, mpc169H
Location &
Maps
more
  • Sequence Map
    Chr5:45611093-45621491 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    455 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3646230
 protein coding gene Chr5:45611021-45621824 (+)
129S1/SvImJ ENSMUSG00200000784
 protein coding gene Chr5:41133644-41144044 (+)
A/J ENSMUSG00195014788
 protein coding gene Chr5:40512708-40523112 (+)
AKR/J ENSMUSG00220000515
 protein coding gene Chr5:40576193-40586599 (+)
BALB/cJ ENSMUSG00180022312
 protein coding gene Chr5:40340780-40351184 (+)
C3H/HeJ ENSMUSG00175014828
 protein coding gene Chr5:42313633-42324037 (+)
C57BL/6NJ ENSMUSG00215001696
 protein coding gene Chr5:41063187-41073587 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027202
 protein coding gene Chr5:39792156-39802246 (+)
CAST/EiJ ENSTCUG00005003050
 protein coding gene Chr5:40480163-40490790 (+)
CBA/J ENSMUSG00210024051
 protein coding gene Chr5:41273264-41283666 (+)
DBA/2J ENSMUSG00185001267
 protein coding gene Chr5:43151550-43161954 (+)
FVB/NJ ENSMUSG00205017444
 protein coding gene Chr5:40068777-40079189 (+)
JF1/MsJ ENSUMUG00000001127
 protein coding gene Chr5:47754081-47764531 (+)
LP/J ENSMUSG00230002211
 protein coding gene Chr5:47818231-47828630 (+)
NOD/ShiLtJ ENSMUSG00190003153
 protein coding gene Chr5:40348046-40358448 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010001484
 protein coding gene Chr5:40407452-40417897 (+)
SPRET/EiJ ENSMSPG00010012643
 protein coding gene Chr5:41752996-41762913 (+)
WSB/EiJ ENSIUOG00005018162
 protein coding gene Chr5:43241125-43251539 (+)



Homology
more
  • Human Ortholog
    CLRN2, clarin 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLRN2, clarin 2
  • Synonyms
    DFNB117
  • Links
    NCBI Gene ID: 645104
    UniProt: A0PK11

  • Chr Location
    4p15.32; chr4:17515165-17527104 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CLRN2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotypes from 3 alleles in 4 genetic backgrounds
    28 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for an ENU-induced allele exhibit nonsyndromic progressive hearing loss with a lack of fast-graded voltage responses.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    6
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    613
  • Tissues
    7
  • cDNA Data
    3
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000049530 Ensembl Gene Model | MGI Sequence Detail 10399 C57BL/6J ±  kb
    transcript ENSMUST00000053250 Ensembl | MGI Sequence Detail 944 Not Applicable  
    polypeptide ENSMUSP00000058204 Ensembl | MGI Sequence Detail 232 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 7
      cDNA 3
      Primer pair 4
      Antibodies 1

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:5792195
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 6
      Phenotypes 28
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:364186 Bottom RT, et al., Defects in hair cells disrupt the development of auditory peripheral circuitry. Nat Commun. 2024 Dec 30;15(1):10899
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory