Gm4894 Gene Detail

Summary

• Symbol
  Gm4894
• Name
  predicted gene 4894

• Feature Type
  lncRNA gene
• IDs
  MGI:3646156
  NCBI Gene: 235327
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:49161831-49191894 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 26.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  897 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646156	lncRNA gene	Chr9:49129126-49207347 (+)
129S1/SvImJ	ENSMUSG00200018199	protein coding gene	Chr9:46328516-46358580 (+)
A/J	no annotation
AKR/J	ENSMUSG00220030786	protein coding gene	Chr9:46101069-46131135 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215026923	protein coding gene	Chr9:46085514-46115578 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032176	protein coding gene	Chr9:46142977-46153216 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210016693	protein coding gene	Chr9:46209965-46240030 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205030536	protein coding gene	Chr9:46484021-46514070 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230036254	protein coding gene	Chr9:46545078-46575141 (+)
NOD/ShiLtJ	ENSMUSG00190017973	protein coding gene	Chr9:46334802-46364839 (+)
NZO/HlLtJ	ENSMUSG00225041542	protein coding gene	Chr9:46506593-46536656 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4894
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Targeted
  3
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS52790.1

• Ensembl
  ENSMUSG00000054156 (Evidence)
• NCBI Gene
  235327

Representative Sequences			Length	Strain/Species
genomic	235327	NCBI Gene Model | MGI Sequence Detail	30064	C57BL/6J
transcript	NR_177946	RefSeq | MGI Sequence Detail	2294	C57BL/6
polypeptide	Q8CA09	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm4894:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85010	Chr9:49161785-49161832 (+)	-22 bp