Rpl21-ps7 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps7
• Name
  ribosomal protein L21, pseudogene 7
• Synonyms
  Gm5816

• Feature Type
  pseudogene
• IDs
  MGI:3646135
  NCBI Gene: 545226
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:83595975-83596489 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 52.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  70

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646135	pseudogene	Chr17:83595938-83596511 (+)
129S1/SvImJ	ENSMUSG00200008217	pseudogene	Chr1:153136444-153136959 (-)
129S1/SvImJ	ENSMUSG00200025129	pseudogene	Chr17:78978788-78979303 (+)
129S1/SvImJ	ENSMUSG00200041250	pseudogene	Chr9:30748846-30749361 (-)
129S1/SvImJ	ENSMUSG00200048228	pseudogene	Chr4:141852153-141852668 (-)
A/J	ENSMUSG00195023190	pseudogene	Chr17:42216066-42216580 (+)
A/J	ENSMUSG00195051359	pseudogene	Chr9:30540155-30540669 (-)
A/J	ENSMUSG00195037774	pseudogene	Chr5:98266818-98267332 (-)
A/J	ENSMUSG00195029018	pseudogene	Chr17:80352128-80352642 (+)
AKR/J	ENSMUSG00220013838	pseudogene	Chr17:79309645-79310159 (+)
AKR/J	ENSMUSG00220048223	pseudogene	Chr9:30575843-30576357 (-)
BALB/cJ	ENSMUSG00180005066	pseudogene	Chr17:80039239-80039753 (+)
BALB/cJ	ENSMUSG00180038230	pseudogene	Chr5:98418975-98419489 (-)
C3H/HeJ	ENSMUSG00175020411	pseudogene	Chr9:30669840-30670354 (-)
C3H/HeJ	ENSMUSG00175016587	pseudogene	Chr17:79290691-79291205 (+)
C3H/HeJ	ENSMUSG00175036216	pseudogene	Chr5:99546290-99546804 (-)
C3H/HeJ	ENSMUSG00175036237	pseudogene	Chr5:100466829-100467343 (-)
C57BL/6NJ	ENSMUSG00215017445	pseudogene	Chr17:79032750-79033264 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046837	pseudogene	Chr4:113035460-113035973 (-)
CAST/EiJ	ENSTCUG00005020588	pseudogene	Chr8:50052217-50052730 (+)
CAST/EiJ	ENSTCUG00005026737	pseudogene	Chr3:25458450-25458963 (+)
CAST/EiJ	ENSTCUG00005015714	pseudogene	Chr17:79824237-79824750 (+)
CBA/J	ENSMUSG00210037031	pseudogene	Chr5:98296591-98297105 (-)
CBA/J	ENSMUSG00210037055	pseudogene	Chr5:99217169-99217683 (-)
CBA/J	ENSMUSG00210020535	pseudogene	Chr17:79149416-79149930 (+)
DBA/2J	ENSMUSG00185021172	pseudogene	Chr17:81969569-81970081 (+)
DBA/2J	ENSMUSG00185050583	pseudogene	Chr5:102169294-102169808 (-)
FVB/NJ	ENSMUSG00205046517	pseudogene	Chr9:31035242-31035756 (-)
FVB/NJ	ENSMUSG00205045038	pseudogene	Chr5:97215967-97216481 (-)
FVB/NJ	ENSMUSG00205045064	pseudogene	Chr5:98136985-98137499 (-)
FVB/NJ	ENSMUSG00205033111	pseudogene	Chr17:79795989-79796503 (+)
JF1/MsJ	ENSUMUG00000041611	pseudogene	Chr13:32110236-32110750 (+)
JF1/MsJ	ENSUMUG00000055238	pseudogene	Chr16:13102693-13103207 (+)
JF1/MsJ	ENSUMUG00000016490	pseudogene	Chr17:81707776-81708288 (+)
JF1/MsJ	ENSUMUG00000043110	pseudogene	Chr17:64505237-64505741 (+)
JF1/MsJ	ENSUMUG00000037444	pseudogene	Chr3:148999854-149000368 (-)
JF1/MsJ	ENSUMUG00000000396	pseudogene	Chr1:20856665-20857179 (+)
JF1/MsJ	ENSUMUG00000051870	pseudogene	Chr14:66196061-66196575 (-)
JF1/MsJ	ENSUMUG00000052932	pseudogene	Chr12:85643320-85643834 (+)
JF1/MsJ	ENSUMUG00000030939	pseudogene	Chr10:87474311-87474826 (+)
LP/J	ENSMUSG00230027577	pseudogene	Chr2:73979079-73979593 (+)
LP/J	ENSMUSG00230023729	pseudogene	Chr4:94569513-94570027 (-)
LP/J	ENSMUSG00230010432	pseudogene	Chr17:82997035-82997549 (+)
LP/J	ENSMUSG00230024815	pseudogene	Chr3:37154188-37154702 (-)
NOD/ShiLtJ	ENSMUSG00190038593	pseudogene	Chr9:30778843-30779357 (-)
NOD/ShiLtJ	ENSMUSG00190010165	pseudogene	Chr17:79062344-79062858 (+)
NZO/HlLtJ	ENSMUSG00225010375	pseudogene	Chr5:96277691-96278206 (-)
NZO/HlLtJ	ENSMUSG00225022630	pseudogene	Chr9:31115305-31115819 (-)
NZO/HlLtJ	ENSMUSG00225026572	pseudogene	Chr5:113969438-113969952 (-)
NZO/HlLtJ	ENSMUSG00225031780	pseudogene	Chr17:85258184-85258698 (+)
PWK/PhJ	ENSLUMG00010038157	pseudogene	Chr11:56635541-56636054 (+)
PWK/PhJ	ENSLUMG00010019998	pseudogene	Chr11:7690571-7691084 (-)
PWK/PhJ	ENSLUMG00010024996	pseudogene	Chr10:85776575-85777088 (+)
PWK/PhJ	ENSLUMG00010000355	pseudogene	Chr1:20439240-20439753 (+)
PWK/PhJ	ENSLUMG00010032268	pseudogene	Chr17:61789595-61790098 (+)
PWK/PhJ	ENSLUMG00010005520	pseudogene	Chr17:78913592-78914105 (+)
PWK/PhJ	ENSLUMG00010002061	pseudogene	Chr3:148940380-148940893 (-)
PWK/PhJ	ENSLUMG00010012212	pseudogene	Chr13:89929309-89929822 (+)
PWK/PhJ	ENSLUMG00010031916	pseudogene	Chr12:79663492-79664005 (+)
SPRET/EiJ	ENSMSPG00010043189	pseudogene	Chr8:67756927-67757441 (+)
SPRET/EiJ	ENSMSPG00010048545	pseudogene	Chr16:13856744-13857258 (+)
SPRET/EiJ	ENSMSPG00010051704	pseudogene	Chr19:2117472-2117986 (-)
SPRET/EiJ	ENSMSPG00010009098	pseudogene	Chr17:79479078-79479590 (+)
SPRET/EiJ	ENSMSPG00010027137	pseudogene	Chr9:119875748-119876262 (-)
SPRET/EiJ	ENSMSPG00010021050	pseudogene	Chr12:98556304-98556818 (-)
SPRET/EiJ	ENSMSPG00010016014	pseudogene	Chr4:86921181-86921695 (-)
WSB/EiJ	ENSIUOG00005010852	pseudogene	Chr17:79985241-79985755 (+)
WSB/EiJ	ENSIUOG00005013916	pseudogene	Chr10:99719264-99719778 (+)
WSB/EiJ	ENSIUOG00005033774	pseudogene	Chr5:100850523-100851037 (-)
WSB/EiJ	ENSIUOG00005033752	pseudogene	Chr5:99894776-99895290 (-)

Homology

• Gene Tree
  Rpl21-ps7
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  74
• RefSeq
  1

• Ensembl
  ENSMUSG00000094256 (Evidence)
• NCBI Gene
  545226

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094256	Ensembl Gene Model | MGI Sequence Detail	515	C57BL/6J
transcript	ENSMUST00000077420	Ensembl | MGI Sequence Detail	515	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;