Rps8-ps3 Pseudogene Detail

Summary

• Symbol
  Rps8-ps3
• Name
  ribosomal protein S8, pseudogene 3
• Synonyms
  Gm8078

• Feature Type
  pseudogene
• IDs
  MGI:3646130
  NCBI Gene: 666391
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:52095222-52095871 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 25.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646130	pseudogene	Chr6:52095201-52095915 (+)
129S1/SvImJ	ENSMUSG00200005658	pseudogene	Chr6:49072472-49073121 (+)
A/J	ENSMUSG00195007087	pseudogene	Chr6:48796282-48796935 (+)
AKR/J	ENSMUSG00220004044	pseudogene	Chr6:48505440-48506089 (+)
BALB/cJ	ENSMUSG00180026985	pseudogene	Chr6:49097996-49098649 (+)
C3H/HeJ	ENSMUSG00175017582	pseudogene	Chr6:48864573-48865226 (+)
C57BL/6NJ	ENSMUSG00215010923	pseudogene	Chr6:49048915-49049564 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011890	pseudogene	Chr6:46602313-46602955 (+)
CAST/EiJ	ENSTCUG00005005267	pseudogene	Chr6:48355345-48355986 (+)
CBA/J	ENSMUSG00210018647	pseudogene	Chr6:48908861-48909514 (+)
DBA/2J	ENSMUSG00185013834	pseudogene	Chr6:49491121-49491774 (+)
FVB/NJ	ENSMUSG00205034991	pseudogene	Chr6:49149248-49149901 (+)
JF1/MsJ	ENSUMUG00000016567	pseudogene	Chr6:48863583-48864242 (+)
LP/J	ENSMUSG00230019513	pseudogene	Chr6:50569782-50570431 (+)
NOD/ShiLtJ	ENSMUSG00190037158	pseudogene	Chr6:48825851-48826500 (+)
NZO/HlLtJ	ENSMUSG00225013584	pseudogene	Chr6:52553678-52554331 (+)
PWK/PhJ	ENSLUMG00010022269	pseudogene	Chr6:48600778-48601437 (+)
SPRET/EiJ	ENSMSPG00010010589	pseudogene	Chr6:49185245-49185867 (+)
WSB/EiJ	ENSIUOG00005029117	pseudogene	Chr6:49171323-49171972 (+)

Homology

• Gene Tree
  Rps8-ps3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000081979 (Evidence)
• NCBI Gene
  666391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081979	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	ENSMUST00000121011	Ensembl | MGI Sequence Detail	650	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:355966 De Kumar B, et al., Analysis of dynamic changes in retinoid-induced transcription and epigenetic profiles of murine Hox clusters in ES cells. Genome Res. 2015 Aug;25(8):1229-43

TSS for Rps8-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1844	Chr6:52095381-52095382 (+)	160 bp