Gm5174 Pseudogene Detail

Summary

• Symbol
  Gm5174
• Name
  predicted gene 5174

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646116
  NCBI Gene: 382395
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:86491822-86493244 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646116	pseudogene	Chr10:86491300-86506880 (+)
129S1/SvImJ	ENSMUSG00200027303	protein coding gene	Chr10:82949357-83003896 (+)
129S1/SvImJ	ENSMUSG00200030909	pseudogene	Chr10:82988555-82989977 (+)
A/J	ENSMUSG00195021907	pseudogene	Chr10:83433668-83435090 (+)
AKR/J	ENSMUSG00220023252	pseudogene	Chr10:83035945-83037367 (+)
BALB/cJ	ENSMUSG00180035525	pseudogene	Chr10:83436779-83438201 (+)
C3H/HeJ	ENSMUSG00175024189	pseudogene	Chr10:83326391-83327813 (+)
C57BL/6NJ	ENSMUSG00215013505	protein coding gene	Chr10:82944016-82998556 (+)
C57BL/6NJ	ENSMUSG00215032890	pseudogene	Chr10:82983215-82984637 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015685	protein coding gene	Chr10:79692053-79693645 (+)
CAST/EiJ	ENSTCUG00005035621	pseudogene	Chr10:82746934-82748359 (+)
CBA/J	ENSMUSG00210037486	pseudogene	Chr10:83167789-83169211 (+)
DBA/2J	ENSMUSG00185041976	pseudogene	Chr10:83385294-83386716 (+)
FVB/NJ	ENSMUSG00205018857	pseudogene	Chr10:83043808-83045233 (+)
JF1/MsJ	ENSUMUG00000022455	pseudogene	Chr10:84740916-84742341 (+)
LP/J	ENSMUSG00230018152	pseudogene	Chr10:85271211-85272633 (+)
NOD/ShiLtJ	ENSMUSG00190020170	pseudogene	Chr10:83419240-83420662 (+)
NZO/HlLtJ	ENSMUSG00225053462	pseudogene	Chr10:89542452-89543874 (+)
PWK/PhJ	ENSLUMG00010023634	pseudogene	Chr10:83017372-83018797 (+)
SPRET/EiJ	ENSMSPG00010035237	pseudogene	Chr10:84507461-84508877 (+)
WSB/EiJ	ENSIUOG00005037321	pseudogene	Chr10:83113330-83114752 (+)

Homology

• Gene Tree
  Gm5174
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5174
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  13

• Ensembl
  ENSMUSG00000090308 (Evidence)
• NCBI Gene
  382395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090308	Ensembl Gene Model | MGI Sequence Detail	1423	C57BL/6J
transcript	ENSMUST00000171131	Ensembl | MGI Sequence Detail	1423	Not Applicable
polypeptide	NP_001371145	RefSeq | MGI Sequence Detail	490	C57BL/6

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:91783 Caenepeel S, et al., The mouse kinome: discovery and comparative genomics of all mouse protein kinases. Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11707-12