Gm5553 Pseudogene Detail

Summary

• Symbol
  Gm5553
• Name
  predicted gene 5553
• Synonyms
  Gm43105

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646114
  NCBI Gene: 433874
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:34464062-34464520 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646114	pseudogene	Chr5:34463969-34464585 (-)
129S1/SvImJ	ENSMUSG00200014712	pseudogene	Chr5:29933116-29933574 (-)
A/J	ENSMUSG00195049856	pseudogene	Chr5:29404747-29405205 (-)
AKR/J	ENSMUSG00220009686	pseudogene	Chr5:29425138-29425596 (-)
BALB/cJ	ENSMUSG00180040262	pseudogene	Chr5:29207649-29208107 (-)
C3H/HeJ	ENSMUSG00175020745	pseudogene	Chr5:31187240-31187698 (-)
C57BL/6NJ	ENSMUSG00215041536	pseudogene	Chr5:29930337-29930795 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011576	pseudogene	Chr5:29237320-29237778 (-)
CAST/EiJ	ENSTCUG00005025430	pseudogene	Chr5:29397542-29398000 (-)
CBA/J	ENSMUSG00210049054	pseudogene	Chr5:30154934-30155392 (-)
DBA/2J	ENSMUSG00185018147	pseudogene	Chr5:32025071-32025529 (-)
FVB/NJ	ENSMUSG00205041268	pseudogene	Chr5:28904434-28904892 (-)
JF1/MsJ	ENSUMUG00000053177	pseudogene	Chr5:36621909-36622367 (-)
LP/J	ENSMUSG00230048665	pseudogene	Chr5:36636794-36637252 (-)
NOD/ShiLtJ	ENSMUSG00190016571	pseudogene	Chr5:29186538-29186996 (-)
NZO/HlLtJ	ENSMUSG00225018322	pseudogene	Chr5:41843036-41843494 (-)
PWK/PhJ	ENSLUMG00010049203	pseudogene	Chr5:29315916-29316373 (-)
SPRET/EiJ	ENSMSPG00010037481	pseudogene	Chr5:30507031-30507486 (-)
WSB/EiJ	ENSIUOG00005018491	pseudogene	Chr5:32113018-32113476 (-)

Homology

• Gene Tree
  Gm5553
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  5
• Spontaneous
  1
• Genomic Mutations
  9 involving Gm5553
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000107006 (Evidence)
• NCBI Gene
  433874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107006	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000202987	Ensembl | MGI Sequence Detail	459	Not Applicable
polypeptide	XP_036021569	RefSeq | MGI Sequence Detail	153	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663242

References

• Summaries
  All 29

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707