Gm6316 Pseudogene Detail

Summary

• Symbol
  Gm6316
• Name
  predicted pseudogene 6316

• Feature Type
  pseudogene
• IDs
  MGI:3646088
  NCBI Gene: 622339
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:69967246-69968265 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 28.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646088	pseudogene	Chr12:69967046-69968283 (-)
129S1/SvImJ	ENSMUSG00200032546	pseudogene	Chr12:61886956-61887974 (-)
A/J	ENSMUSG00195014881	pseudogene	Chr12:64584223-64585240 (-)
AKR/J	ENSMUSG00220015094	pseudogene	Chr12:62384818-62385835 (-)
BALB/cJ	ENSMUSG00180033864	pseudogene	Chr12:63583282-63584299 (-)
C3H/HeJ	ENSMUSG00175030170	pseudogene	Chr12:66677699-66678716 (-)
C57BL/6NJ	ENSMUSG00215034234	pseudogene	Chr12:62956189-62957208 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036893	pseudogene	Chr12:62915475-62916487 (-)
CBA/J	ENSMUSG00210031741	pseudogene	Chr12:63147716-63148733 (-)
DBA/2J	ENSMUSG00185004944	pseudogene	Chr12:65047099-65048116 (-)
FVB/NJ	ENSMUSG00205036201	pseudogene	Chr12:62789206-62790223 (-)
JF1/MsJ	ENSUMUG00000032485	pseudogene	Chr12:69005481-69006491 (-)
LP/J	ENSMUSG00230022895	pseudogene	Chr12:72012492-72013509 (-)
NOD/ShiLtJ	ENSMUSG00190012397	pseudogene	Chr12:62201242-62202259 (-)
NZO/HlLtJ	ENSMUSG00225038551	pseudogene	Chr12:74088995-74090013 (-)
PWK/PhJ	ENSLUMG00010031989	pseudogene	Chr12:63081156-63082169 (-)
SPRET/EiJ	ENSMSPG00010031387	pseudogene	Chr12:64768880-64769888 (-)
WSB/EiJ	ENSIUOG00005012966	pseudogene	Chr12:62827570-62828588 (-)

Homology

• Gene Tree
  Gm6316
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6316
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000078370 (Evidence)
• NCBI Gene
  622339

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078370	Ensembl Gene Model | MGI Sequence Detail	1020	C57BL/6J
transcript	ENSMUST00000082064	Ensembl | MGI Sequence Detail	1020	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;