Gm5525 Pseudogene Detail

Summary

• Symbol
  Gm5525
• Name
  predicted gene 5525

• Feature Type
  pseudogene
• IDs
  MGI:3646042
  NCBI Gene: 433283
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:29523685-29524996 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 11.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646042	pseudogene	Chr1:29523605-29525015 (-)
129S1/SvImJ	ENSMUSG00200002278	pseudogene	Chr6:5002411-5003722 (-)
129S1/SvImJ	ENSMUSG00200001071	pseudogene	Chr1:27014797-27016108 (-)
A/J	ENSMUSG00195000080	pseudogene	Chr1:26765926-26767237 (-)
AKR/J	ENSMUSG00220016655	pseudogene	Chr17:81948515-81949826 (+)
AKR/J	ENSMUSG00220000626	pseudogene	Chr1:26804194-26805505 (-)
BALB/cJ	ENSMUSG00180001125	pseudogene	Chr1:26844864-26846175 (-)
C3H/HeJ	ENSMUSG00175007230	pseudogene	Chr17:81936810-81938121 (+)
C3H/HeJ	ENSMUSG00175000745	pseudogene	Chr1:26761650-26762961 (-)
C57BL/6NJ	ENSMUSG00215001081	pseudogene	Chr1:26810726-26812037 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014677	pseudogene	Chr1:51188076-51189380 (+)
CAST/EiJ	ENSTCUG00005000505	pseudogene	Chr1:26881032-26882344 (-)
CBA/J	ENSMUSG00210010941	pseudogene	Chr1:26620369-26621680 (-)
CBA/J	ENSMUSG00210022488	pseudogene	Chr17:81795599-81796910 (+)
DBA/2J	ENSMUSG00185016803	pseudogene	Chr1:27685246-27686557 (-)
FVB/NJ	ENSMUSG00205006998	pseudogene	Chr1:26742627-26743938 (-)
JF1/MsJ	ENSUMUG00000014492	pseudogene	Chr6:4935922-4937233 (-)
JF1/MsJ	ENSUMUG00000000322	pseudogene	Chr1:26814155-26815466 (-)
JF1/MsJ	ENSUMUG00000014917	pseudogene	Chr14:108117724-108119035 (+)
LP/J	ENSMUSG00230010985	pseudogene	Chr17:85643416-85644727 (+)
LP/J	ENSMUSG00230004191	pseudogene	Chr14:108987010-108988321 (+)
LP/J	ENSMUSG00230000557	pseudogene	Chr1:27684341-27685652 (-)
NOD/ShiLtJ	ENSMUSG00190000085	pseudogene	Chr1:26759161-26760472 (-)
NZO/HlLtJ	ENSMUSG00225000640	pseudogene	Chr1:30939556-30940867 (-)
PWK/PhJ	ENSLUMG00010000259	pseudogene	Chr1:26446590-26447901 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001990	pseudogene	Chr1:26737581-26738892 (-)
WSB/EiJ	ENSIUOG00005023538	pseudogene	Chr17:82610477-82611788 (+)

Homology

• Gene Tree
  Gm5525
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5525
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000099492 (Evidence)
• NCBI Gene
  433283

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099492	Ensembl Gene Model | MGI Sequence Detail	1312	C57BL/6J
transcript	ENSMUST00000190438	Ensembl | MGI Sequence Detail	1312	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11164	Chr1:29525015-29525020 (-)	-22 bp