Gm5165 Gene Detail

Summary

• Symbol
  Gm5165
• Name
  predicted gene 5165

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3646034
  NCBI Gene: 102640673
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:17455165-17486609 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  790 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646034	protein coding gene	Chr17:17455115-17486611 (+)
129S1/SvImJ	ENSMUSG00200036203	protein coding gene	Chr17:12857569-13003638 (+)
129S1/SvImJ	ENSMUSG00200039203	lncRNA gene	Chr17:12913145-12944647 (+)
A/J	ENSMUSG00195038500	lncRNA gene	Chr17:13800751-13832253 (+)
AKR/J	ENSMUSG00220028629	lncRNA gene	Chr17:13450267-13481768 (+)
AKR/J	ENSMUSG00220022808	protein coding gene	Chr17:13428275-13539279 (+)
BALB/cJ	ENSMUSG00180019663	lncRNA gene	Chr17:13097591-13129092 (+)
BALB/cJ	ENSMUSG00180017166	protein coding gene	Chr17:13075587-13132269 (+)
C3H/HeJ	ENSMUSG00175033955	protein coding gene	Chr17:12935595-12969950 (+)
C3H/HeJ	ENSMUSG00175044383	lncRNA gene	Chr17:12935630-12967123 (+)
C57BL/6NJ	ENSMUSG00215040884	protein coding gene	Chr17:12884743-13004249 (+)
C57BL/6NJ	ENSMUSG00215044008	lncRNA gene	Chr17:12919070-12950567 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023550	lncRNA gene	Chr17:13398746-13431394 (+)
CBA/J	ENSMUSG00210044805	lncRNA gene	Chr17:12743280-12774776 (+)
DBA/2J	ENSMUSG00185037389	protein coding gene	Chr17:14935026-14969406 (+)
DBA/2J	ENSMUSG00185041097	lncRNA gene	Chr17:14935080-14966579 (+)
FVB/NJ	ENSMUSG00205039034	lncRNA gene	Chr17:13429889-13461387 (+)
JF1/MsJ	ENSUMUG00000041345	lncRNA gene	Chr17:14548224-14579287 (+)
LP/J	ENSMUSG00230026703	protein coding gene	Chr17:16333230-16367610 (+)
LP/J	ENSMUSG00230028028	lncRNA gene	Chr17:16333284-16364783 (+)
NOD/ShiLtJ	ENSMUSG00190042216	lncRNA gene	Chr17:13135558-13167052 (+)
NZO/HlLtJ	ENSMUSG00225047032	protein coding gene	Chr17:18286853-18321233 (+)
NZO/HlLtJ	ENSMUSG00225048708	lncRNA gene	Chr17:18286907-18318406 (+)
PWK/PhJ	ENSLUMG00010021806	lncRNA gene	Chr17:13099507-13130616 (+)
SPRET/EiJ	ENSMSPG00010041851	lncRNA gene	Chr17:14359270-14394041 (+)
WSB/EiJ	ENSIUOG00005042497	lncRNA gene	Chr17:13759266-13790765 (+)

Homology

• Gene Tree
  Gm5165
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  36
• Gene trapped
  36
• Find Mice (IMSR)
  85 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000116802 (Evidence)
• NCBI Gene
  102640673

Representative Sequences			Length	Strain/Species
genomic	102640673	NCBI Gene Model | MGI Sequence Detail	31445	C57BL/6J
transcript	NM_001362181	RefSeq | MGI Sequence Detail	2447	C57BL/6
polypeptide	NP_001349110	RefSeq | MGI Sequence Detail	667	C57BL/6

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:331893 Yang J, et al., Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Front Genet. 2022;13:974357

TSS for Gm5165:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142780	Chr17:17455153-17455204 (+)	14 bp