Gm5943 Pseudogene Detail

Summary

• Symbol
  Gm5943
• Name
  predicted pseudogene 5943

• Feature Type
  pseudogene
• IDs
  MGI:3646004
  NCBI Gene: 546362
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:113898847-113899305 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646004	pseudogene	ChrX:113898838-113899682 (+)
129S1/SvImJ	ENSMUSG00200024774	pseudogene	ChrX:95716011-95716469 (+)
A/J	ENSMUSG00195026474	pseudogene	ChrX:99401655-99402113 (+)
AKR/J	ENSMUSG00220013522	pseudogene	ChrX:93694376-93694834 (+)
BALB/cJ	ENSMUSG00180026504	pseudogene	ChrX:96053921-96054379 (+)
C3H/HeJ	ENSMUSG00175028797	pseudogene	ChrX:99659657-99660115 (+)
C57BL/6NJ	ENSMUSG00215014773	pseudogene	ChrX:96368279-96368737 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021380	pseudogene	ChrX:97048070-97048528 (+)
CBA/J	ENSMUSG00210022326	pseudogene	ChrX:96527776-96528234 (+)
DBA/2J	ENSMUSG00185029888	pseudogene	ChrX:109055149-109055607 (+)
FVB/NJ	ENSMUSG00205021331	pseudogene	ChrX:95569089-95569547 (+)
JF1/MsJ	ENSUMUG00000018538	pseudogene	ChrX:129621913-129622371 (+)
LP/J	ENSMUSG00230005651	pseudogene	ChrX:115682877-115683335 (+)
NOD/ShiLtJ	ENSMUSG00190013785	pseudogene	ChrX:95787332-95787790 (+)
NZO/HlLtJ	ENSMUSG00225040861	pseudogene	ChrX:120856188-120856646 (+)
PWK/PhJ	ENSLUMG00010026455	pseudogene	ChrX:94898810-94899268 (+)
SPRET/EiJ	ENSMSPG00010022881	pseudogene	ChrX:99290180-99290638 (+)
WSB/EiJ	ENSIUOG00005015047	pseudogene	ChrX:96151135-96151593 (+)

Homology

• Gene Tree
  Gm5943
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083971 (Evidence)
• NCBI Gene
  546362

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083971	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000119458	Ensembl | MGI Sequence Detail	459	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;