Gm5942 Pseudogene Detail

Summary

• Symbol
  Gm5942
• Name
  predicted gene 5942

• Feature Type
  pseudogene
• IDs
  MGI:3646003
  NCBI Gene: 546361
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:113684016-113684454 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646003	pseudogene	ChrX:113684016-113684511 (-)
129S1/SvImJ	ENSMUSG00200024603	pseudogene	ChrX:95496970-95497408 (-)
A/J	ENSMUSG00195026758	pseudogene	ChrX:99167310-99167747 (-)
AKR/J	ENSMUSG00220013686	pseudogene	ChrX:93475308-93475746 (-)
BALB/cJ	ENSMUSG00180027782	pseudogene	ChrX:95826475-95826912 (-)
C3H/HeJ	ENSMUSG00175029216	pseudogene	ChrX:99432120-99432557 (-)
C57BL/6NJ	ENSMUSG00215015388	pseudogene	ChrX:96138302-96138740 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012857	pseudogene	ChrX:107811676-107812117 (-)
CAST/EiJ	ENSTCUG00005021224	pseudogene	ChrX:96832753-96833191 (-)
CBA/J	ENSMUSG00210022396	pseudogene	ChrX:96300316-96300753 (-)
DBA/2J	ENSMUSG00185030321	pseudogene	ChrX:108836093-108836531 (-)
FVB/NJ	ENSMUSG00205021147	pseudogene	ChrX:95351021-95351459 (-)
JF1/MsJ	ENSUMUG00000018519	pseudogene	ChrX:129394242-129394679 (-)
LP/J	ENSMUSG00230005710	pseudogene	ChrX:115464427-115464865 (-)
NOD/ShiLtJ	ENSMUSG00190013699	pseudogene	ChrX:95568273-95568711 (-)
NZO/HlLtJ	ENSMUSG00225040899	pseudogene	ChrX:120637131-120637569 (-)
PWK/PhJ	ENSLUMG00010026751	pseudogene	ChrX:94671944-94672381 (-)
SPRET/EiJ	ENSMSPG00010022845	pseudogene	ChrX:99069169-99069613 (-)
WSB/EiJ	ENSIUOG00005015084	pseudogene	ChrX:95936150-95936588 (-)

Homology

• Gene Tree
  Gm5942
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000083561 (Evidence)
• NCBI Gene
  546361

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083561	Ensembl Gene Model | MGI Sequence Detail	439	C57BL/6J
transcript	ENSMUST00000120046	Ensembl | MGI Sequence Detail	439	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;