Gm7527 Pseudogene Detail

Summary

• Symbol
  Gm7527
• Name
  predicted gene 7527

• Feature Type
  pseudogene
• IDs
  MGI:3645979
  NCBI Gene: 665176
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:9495621-9496509 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 4.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645979	pseudogene	Chr18:9495621-9496509 (+)
129S1/SvImJ	ENSMUSG00200025253	pseudogene	Chr18:6408335-6409222 (+)
A/J	ENSMUSG00195009223	pseudogene	Chr18:6616595-6617483 (+)
AKR/J	ENSMUSG00220019696	pseudogene	Chr18:6607781-6608669 (+)
BALB/cJ	ENSMUSG00180005466	pseudogene	Chr18:7052923-7053811 (+)
C3H/HeJ	ENSMUSG00175007909	pseudogene	Chr18:6588287-6589175 (+)
C57BL/6NJ	ENSMUSG00215026552	pseudogene	Chr18:6331861-6332749 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017680	pseudogene	Chr18:6479099-6479988 (+)
CBA/J	ENSMUSG00210021929	pseudogene	Chr18:6601210-6602098 (+)
DBA/2J	ENSMUSG00185031728	pseudogene	Chr18:6610174-6611062 (+)
FVB/NJ	ENSMUSG00205035018	pseudogene	Chr18:6391250-6392138 (+)
JF1/MsJ	ENSUMUG00000039777	pseudogene	Chr18:6655957-6656844 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010184	pseudogene	Chr18:6382997-6383885 (+)
NZO/HlLtJ	ENSMUSG00225035015	pseudogene	Chr18:8593643-8594531 (+)
PWK/PhJ	ENSLUMG00010009959	pseudogene	Chr18:6843735-6844621 (+)
SPRET/EiJ	ENSMSPG00010011719	pseudogene	Chr18:6494474-6495375 (+)
WSB/EiJ	ENSIUOG00005028168	pseudogene	Chr18:6460016-6460904 (+)

Homology

• Gene Tree
  Gm7527
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000117503 (Evidence)
• NCBI Gene
  665176

Representative Sequences			Length	Strain/Species
genomic	665176	NCBI Gene Model | MGI Sequence Detail	889	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7527:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149999	Chr18:9494667-9494677 (+)	-949 bp