Gm16399 Pseudogene Detail

Summary

• Symbol
  Gm16399
• Name
  predicted pseudogene 16399

• Feature Type
  pseudogene
• IDs
  MGI:3645963
  NCBI Gene: 100041785
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:14867416-14867634 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 3.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645963	pseudogene	Chr3:14867275-14867692 (-)
129S1/SvImJ	ENSMUSG00200018253	pseudogene	Chr3:11609827-11610045 (-)
A/J	ENSMUSG00195015936	pseudogene	Chr3:11896538-11896756 (-)
AKR/J	ENSMUSG00220009322	pseudogene	Chr3:11947044-11947262 (-)
BALB/cJ	ENSMUSG00180001047	pseudogene	Chr3:11917437-11917655 (-)
C3H/HeJ	ENSMUSG00175003169	pseudogene	Chr3:11919774-11919992 (-)
C57BL/6NJ	ENSMUSG00215001423	pseudogene	Chr3:11909113-11909331 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024532	pseudogene	Chr3:11840996-11841214 (-)
CBA/J	ENSMUSG00210001674	pseudogene	Chr3:11888657-11888875 (-)
DBA/2J	ENSMUSG00185000643	pseudogene	Chr3:11891440-11891658 (-)
FVB/NJ	ENSMUSG00205002552	pseudogene	Chr3:11620150-11620368 (-)
JF1/MsJ	ENSUMUG00000018346	pseudogene	Chr3:11709862-11710080 (-)
LP/J	ENSMUSG00230004824	pseudogene	Chr3:13811748-13811966 (-)
NOD/ShiLtJ	ENSMUSG00190002466	pseudogene	Chr3:11992001-11992219 (-)
NZO/HlLtJ	ENSMUSG00225001058	pseudogene	Chr3:16395686-16395904 (-)
PWK/PhJ	ENSLUMG00010003491	pseudogene	Chr3:11851982-11852200 (-)
SPRET/EiJ	ENSMSPG00010001943	pseudogene	Chr3:11674981-11675199 (-)
WSB/EiJ	ENSIUOG00005001584	pseudogene	Chr3:11967141-11967359 (-)

Homology

• Gene Tree
  Gm16399
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097790 (Evidence)
• NCBI Gene
  100041785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097790	Ensembl Gene Model | MGI Sequence Detail	219	C57BL/6J
transcript	ENSMUST00000181423	Ensembl | MGI Sequence Detail	219	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm16399:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32647	Chr3:14867663-14867697 (-)	-46 bp