Gm4754 Pseudogene Detail

Summary

• Symbol
  Gm4754
• Name
  predicted gene 4754

• Feature Type
  pseudogene
• IDs
  MGI:3645925
  NCBI Gene: 208522
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:41499466-41500274 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 22.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645925	pseudogene	Chr5:41499445-41500346 (+)
129S1/SvImJ	ENSMUSG00200032695	pseudogene	Chr5:37001252-37002060 (+)
A/J	ENSMUSG00195029672	pseudogene	Chr5:36401178-36401986 (+)
AKR/J	ENSMUSG00220002512	pseudogene	Chr5:36444738-36445546 (+)
BALB/cJ	ENSMUSG00180024762	pseudogene	Chr5:36220840-36221648 (+)
C3H/HeJ	ENSMUSG00175020892	pseudogene	Chr5:38194205-38195013 (+)
C57BL/6NJ	ENSMUSG00215006704	pseudogene	Chr5:36952349-36953157 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025486	pseudogene	Chr5:36358475-36359283 (+)
CBA/J	ENSMUSG00210005097	pseudogene	Chr5:37162061-37162869 (+)
DBA/2J	ENSMUSG00185017786	pseudogene	Chr5:39058471-39059279 (+)
FVB/NJ	ENSMUSG00205020067	pseudogene	Chr5:35993782-35994590 (+)
JF1/MsJ	ENSUMUG00000002417	pseudogene	Chr5:43625896-43626704 (+)
LP/J	ENSMUSG00230002903	pseudogene	Chr5:43700423-43701231 (+)
NOD/ShiLtJ	ENSMUSG00190003387	pseudogene	Chr5:36236789-36237597 (+)
NZO/HlLtJ	ENSMUSG00225017773	pseudogene	Chr5:48891242-48892050 (+)
PWK/PhJ	ENSLUMG00010024011	pseudogene	Chr5:36278109-36278917 (+)
SPRET/EiJ	ENSMSPG00010037827	pseudogene	Chr5:37571764-37572577 (+)
WSB/EiJ	ENSIUOG00005018949	pseudogene	Chr5:39154814-39155622 (+)

Homology

• Gene Tree
  Gm4754
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm4754
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106895 (Evidence)
• NCBI Gene
  208522

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106895	Ensembl Gene Model | MGI Sequence Detail	809	C57BL/6J
transcript	ENSMUST00000201337	Ensembl | MGI Sequence Detail	809	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm4754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46069	Chr5:41499439-41499441 (+)	-26 bp