Spin2-ps10 Pseudogene Detail

Summary

• Symbol
  Spin2-ps10
• Name
  spindlin family, member 2, pseudogene 10
• Synonyms
  Gm5923

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645924
  NCBI Gene: 546176
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:31719468-31721138 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 19.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645924	pseudogene	ChrX:31719468-31721192 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195037773	pseudogene	ChrX:57962321-57963083 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180049808	pseudogene	ChrX:54543165-54543928 (-)
C3H/HeJ	ENSMUSG00175035020	pseudogene	ChrX:58126916-58127678 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042321	pseudogene	ChrX:56039326-56040088 (-)
CBA/J	ENSMUSG00210046128	pseudogene	ChrX:54807430-54808192 (-)
DBA/2J	ENSMUSG00185029506	pseudogene	ChrX:2615721-2616483 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000018952	pseudogene	ChrX:12584146-12584907 (-)
JF1/MsJ	ENSUMUG00000016988	pseudogene	ChrX:4980795-4981556 (+)
JF1/MsJ	ENSUMUG00000016901	pseudogene	ChrX:15873-16634 (-)
JF1/MsJ	ENSUMUG00000017060	pseudogene	ChrX:6455995-6456756 (+)
JF1/MsJ	ENSUMUG00000016890	pseudogene	ChrX:9376079-9376841 (+)
LP/J	ENSMUSG00230007386	pseudogene	ChrX:9048793-9049555 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225038049	pseudogene	ChrX:4872648-4873410 (-)
PWK/PhJ	ENSLUMG00010045994	pseudogene	ChrX:53864930-53865692 (-)
SPRET/EiJ	ENSMSPG00010026003	pseudogene	ChrX:3842750-3843512 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Spin2-ps10
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4
• UniProt
  1

• Ensembl
  ENSMUSG00000114897 (Evidence)
• NCBI Gene
  546176

Representative Sequences			Length	Strain/Species
genomic	546176	NCBI Gene Model | MGI Sequence Detail	1671	C57BL/6J
transcript	XM_006536335	RefSeq | MGI Sequence Detail	1014	C57BL/6J
polypeptide	A0ABA7IW43	UniProt | EBI | MGI Sequence Detail	236	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR042567 Spindlin/spermiogenesis-specific domain superfamily
  IPR003671 Spindlin/spermiogenesis-specific protein

Other
Accession IDs

MGI:7470938

References

• Summaries
  All 6

  Gene Ontology 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;