Gm8818 Pseudogene Detail

Summary

• Symbol
  Gm8818
• Name
  predicted pseudogene 8818

• Feature Type
  pseudogene
• IDs
  MGI:3645903
  NCBI Gene: 667795
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153181178-153182224 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 65.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645903	pseudogene	Chr1:153181102-153182437 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010395	pseudogene	Chr1:158121680-158122588 (+)
A/J	MGP_AJ_G0010385	pseudogene	Chr1:151737383-151738429 (+)
AKR/J	MGP_AKRJ_G0010354	pseudogene	Chr1:156443954-156445915 (+)
BALB/cJ	MGP_BALBcJ_G0010361	pseudogene	Chr1:152309189-152310235 (+)
C3H/HeJ	MGP_C3HHeJ_G0010293	pseudogene	Chr1:156541446-156542457 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010633	pseudogene	Chr1:163572125-163573171 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012106	pseudogene	Chr7:3217569-3218589 (-)
CAST/EiJ	MGP_CASTEiJ_G0010112	pseudogene	Chr1:156051724-156052770 (+)
CBA/J	MGP_CBAJ_G0010262	pseudogene	Chr1:169338069-169339115 (+)
DBA/2J	MGP_DBA2J_G0010295	pseudogene	Chr1:150754539-150755490 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013746	pseudogene	Chr7:3745589-3746614 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010277	pseudogene	Chr1:176959288-176960239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010597	pseudogene	Chr1:156220908-156222691 (+)
PWK/PhJ	MGP_PWKPhJ_G0013100	pseudogene	Chr7:3734378-3735513 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012879	pseudogene	Chr7:3142818-3143852 (-)
WSB/EiJ	MGP_WSBEiJ_G0013348	pseudogene	Chr7:3705761-3706786 (-)

Homology

• Gene Tree
  Gm8818
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm8818
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000079138 (Evidence)
• NCBI Gene
  667795

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079138	Ensembl Gene Model | MGI Sequence Detail	1047	C57BL/6J
transcript	ENSMUST00000110797	Ensembl | MGI Sequence Detail	1047	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8818:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9453	Chr1:153180763-153180775 (+)	-409 bp