Dppa3-ps Pseudogene Detail

Summary

• Symbol
  Dppa3-ps
• Name
  developmental pluripotency-associated 3, pseudogene
• Synonyms
  Gm6269

• Feature Type
  pseudogene
• IDs
  MGI:3645894
  NCBI Gene: 621903
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:36807300-36807750 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 21.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645894	pseudogene	ChrX:36807033-36807850 (-)
129S1/SvImJ	ENSMUSG00200022105	pseudogene	ChrX:20738554-20739004 (-)
A/J	ENSMUSG00195025682	pseudogene	ChrX:23429116-23429566 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180013131	pseudogene	ChrX:21175820-21176270 (-)
C3H/HeJ	ENSMUSG00175024650	pseudogene	ChrX:24169045-24169495 (-)
C57BL/6NJ	ENSMUSG00215025461	pseudogene	ChrX:21136865-21137315 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036903	pseudogene	Chr7:11822960-11823410 (-)
CAST/EiJ	ENSTCUG00005034318	pseudogene	ChrX:23043803-23044395 (-)
CBA/J	ENSMUSG00210035782	pseudogene	ChrX:21483186-21483636 (-)
DBA/2J	ENSMUSG00185025063	pseudogene	ChrX:32163734-32164184 (-)
FVB/NJ	ENSMUSG00205024404	pseudogene	ChrX:20115387-20115837 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230014276	pseudogene	ChrX:38656187-38656637 (-)
NOD/ShiLtJ	ENSMUSG00190023517	pseudogene	ChrX:20604175-20604625 (-)
NZO/HlLtJ	ENSMUSG00225039533	pseudogene	ChrX:43862685-43863135 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010018764	pseudogene	ChrX:21987567-21988137 (-)
WSB/EiJ	ENSIUOG00005039510	pseudogene	ChrX:21639613-21640063 (-)

Homology

• Gene Tree
  Dppa3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Dppa3-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000080241 (Evidence)
• NCBI Gene
  621903

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080241	Ensembl Gene Model | MGI Sequence Detail	451	C57BL/6J
transcript	ENSMUST00000116499	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:229199 Song HW, et al., shRNA off-target effects in vivo: impaired endogenous siRNA expression and spermatogenic defects. PLoS One. 2015;10(3):e0118549
• Latest
  J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118