Gm6713 Pseudogene Detail

Summary

• Symbol
  Gm6713
• Name
  predicted gene 6713

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645890
  NCBI Gene: 626858
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:85545191-85546636 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 41.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645890	pseudogene	Chr10:85530245-85546862 (-)
129S1/SvImJ	ENSMUSG00200028209	protein coding gene	Chr10:82024479-82056274 (-)
129S1/SvImJ	ENSMUSG00200030525	pseudogene	Chr10:82039443-82040888 (-)
A/J	ENSMUSG00195023669	pseudogene	Chr10:82489321-82490766 (-)
A/J	ENSMUSG00195021302	protein coding gene	Chr10:82474357-82506152 (-)
AKR/J	ENSMUSG00220020326	protein coding gene	Chr10:82076663-82108466 (-)
AKR/J	ENSMUSG00220022301	pseudogene	Chr10:82091635-82093080 (-)
BALB/cJ	ENSMUSG00180033769	pseudogene	Chr10:82492438-82493883 (-)
BALB/cJ	ENSMUSG00180031226	protein coding gene	Chr10:82477474-82509270 (-)
C3H/HeJ	ENSMUSG00175024367	pseudogene	Chr10:82368312-82369757 (-)
C3H/HeJ	ENSMUSG00175022358	protein coding gene	Chr10:82353348-82385143 (-)
C57BL/6NJ	ENSMUSG00215026336	pseudogene	Chr10:82036760-82038205 (-)
C57BL/6NJ	ENSMUSG00215023679	protein coding gene	Chr10:82021466-82053591 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037332	pseudogene	Chr10:81810077-81811521 (-)
CBA/J	ENSMUSG00210036914	pseudogene	Chr10:82219040-82220485 (-)
CBA/J	ENSMUSG00210031922	protein coding gene	Chr10:82204076-82235871 (-)
DBA/2J	ENSMUSG00185042591	pseudogene	Chr10:82441020-82442464 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000023670	pseudogene	Chr10:83824137-83825582 (-)
LP/J	ENSMUSG00230018701	pseudogene	Chr10:84333470-84334914 (-)
NOD/ShiLtJ	ENSMUSG00190016337	protein coding gene	Chr10:82460026-82491821 (-)
NOD/ShiLtJ	ENSMUSG00190018247	pseudogene	Chr10:82474990-82476435 (-)
NZO/HlLtJ	ENSMUSG00225053748	pseudogene	Chr10:88598251-88599696 (-)
NZO/HlLtJ	ENSMUSG00225048527	protein coding gene	Chr10:88583289-88615082 (-)
PWK/PhJ	ENSLUMG00010024436	pseudogene	Chr10:82103584-82105026 (-)
SPRET/EiJ	ENSMSPG00010036807	pseudogene	Chr10:83616321-83617772 (+)
SPRET/EiJ	ENSMSPG00010032385	pseudogene	Chr10:83543527-83544972 (-)
WSB/EiJ	ENSIUOG00005039032	pseudogene	Chr10:82192830-82194274 (-)

Homology

• Gene Tree
  Gm6713
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6713
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  19

• Ensembl
  ENSMUSG00000111609 (Evidence)
• NCBI Gene
  626858

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111609	Ensembl Gene Model | MGI Sequence Detail	1446	C57BL/6J
transcript	ENSMUST00000216137	Ensembl | MGI Sequence Detail	1446	Not Applicable
polypeptide	NP_001371147	RefSeq | MGI Sequence Detail	491	C57BL/6

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87