Gm6712 Gene Detail

Summary

• Symbol
  Gm6712
• Name
  predicted gene 6712

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3645888
  NCBI Gene: 100862203
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:17514705-17539847 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  616 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645888	protein coding gene	Chr17:17514629-17594184 (+)
129S1/SvImJ	ENSMUSG00200039196	lncRNA gene	Chr17:12972707-12998069 (+)
129S1/SvImJ	ENSMUSG00200036236	protein coding gene	Chr17:12994351-12997908 (+)
A/J	ENSMUSG00195038460	lncRNA gene	Chr17:13860319-13885682 (+)
AKR/J	ENSMUSG00220028588	lncRNA gene	Chr17:13509822-13535199 (+)
BALB/cJ	ENSMUSG00180019638	lncRNA gene	Chr17:13157157-13182519 (+)
C3H/HeJ	ENSMUSG00175044356	lncRNA gene	Chr17:12988838-13014201 (+)
C57BL/6NJ	ENSMUSG00215040925	protein coding gene	Chr17:13000285-13003842 (+)
C57BL/6NJ	ENSMUSG00215044000	lncRNA gene	Chr17:12978633-13004003 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023542	lncRNA gene	Chr17:13453129-13478492 (+)
CBA/J	ENSMUSG00210044779	lncRNA gene	Chr17:12796489-12821851 (+)
DBA/2J	ENSMUSG00185041064	lncRNA gene	Chr17:14994643-15020005 (+)
FVB/NJ	ENSMUSG00205038984	lncRNA gene	Chr17:13483057-13508426 (+)
JF1/MsJ	ENSUMUG00000041264	lncRNA gene	Chr17:14601822-14627150 (+)
LP/J	ENSMUSG00230028155	lncRNA gene	Chr17:16392847-16418203 (+)
NOD/ShiLtJ	ENSMUSG00190042159	lncRNA gene	Chr17:13195118-13220487 (+)
NZO/HlLtJ	ENSMUSG00225048857	lncRNA gene	Chr17:18346470-18371832 (+)
PWK/PhJ	ENSLUMG00010021790	lncRNA gene	Chr17:13153138-13176043 (+)
SPRET/EiJ	ENSMSPG00010041822	lncRNA gene	Chr17:14416756-14450347 (+)
WSB/EiJ	ENSIUOG00005042459	lncRNA gene	Chr17:13818822-13844183 (+)

Homology

• Gene Tree
  Gm6712
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  12
• Gene trapped
  12
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  3

• Ensembl
  ENSMUSG00000072761 (Evidence)
• NCBI Gene
  100862203

Representative Sequences			Length	Strain/Species
genomic	100862203	NCBI Gene Model | MGI Sequence Detail	25143	C57BL/6J
transcript	NM_001324550	RefSeq | MGI Sequence Detail	2007	ZRU/MplStud
polypeptide	NP_001311479	RefSeq | MGI Sequence Detail	471	ZRU/MplStud

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm6712:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142781	Chr17:17514699-17514723 (+)	6 bp