Gm5521 Pseudogene Detail

Summary

• Symbol
  Gm5521
• Name
  predicted gene 5521

• Feature Type
  pseudogene
• IDs
  MGI:3645827
  NCBI Gene: 433261
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:61155687-61156487 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 56.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645827	pseudogene	Chr19:61155400-61157201 (+)
129S1/SvImJ	ENSMUSG00200015113	pseudogene	Chr19:57855391-57856192 (+)
A/J	ENSMUSG00195002563	pseudogene	Chr19:58034048-58034849 (+)
AKR/J	ENSMUSG00220017927	pseudogene	Chr19:57787666-57788467 (+)
BALB/cJ	ENSMUSG00180020422	pseudogene	Chr19:58278254-58279055 (+)
C3H/HeJ	ENSMUSG00175022383	pseudogene	Chr19:57819163-57819964 (+)
C57BL/6NJ	ENSMUSG00215026023	pseudogene	Chr19:57892381-57893181 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015572	pseudogene	Chr19:57451162-57451963 (+)
CBA/J	ENSMUSG00210021382	pseudogene	Chr19:57899106-57899907 (+)
DBA/2J	ENSMUSG00185028463	pseudogene	Chr19:58395049-58395850 (+)
FVB/NJ	ENSMUSG00205003617	pseudogene	Chr19:57282689-57283490 (+)
JF1/MsJ	ENSUMUG00000040135	pseudogene	Chr19:58591071-58591871 (+)
LP/J	ENSMUSG00230028232	pseudogene	Chr19:59137667-59138468 (+)
NOD/ShiLtJ	ENSMUSG00190013475	pseudogene	Chr19:57820813-57821614 (+)
NZO/HlLtJ	ENSMUSG00225021167	pseudogene	Chr19:62760849-62761649 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005026036	pseudogene	Chr19:57239634-57240435 (+)

Homology

• Gene Tree
  Gm5521
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118252 (Evidence)
• NCBI Gene
  433261

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118252	Ensembl Gene Model | MGI Sequence Detail	801	C57BL/6J
transcript	ENSMUST00000235512	Ensembl | MGI Sequence Detail	801	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm5521:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157372	Chr19:61155411-61155417 (+)	-273 bp