Pabpc1l2a Gene Detail

Summary

• Symbol
  Pabpc1l2a
• Name
  poly(A) binding protein, cytoplasmic 1-like 2A
• Synonyms
  EG245545, Pabpc1l2a-ps, Rbm32a

• Feature Type
  protein coding gene
• IDs
  MGI:3645788
  NCBI Gene: 245545
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:102108348-102110954 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 45.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645788	protein coding gene	ChrX:102108348-102111144 (-)
129S1/SvImJ	ENSMUSG00200039587	pseudogene	ChrX:83862223-83862735 (-)
A/J	ENSMUSG00195039159	protein coding gene	ChrX:87563998-87618002 (-)
A/J	ENSMUSG00195042909	pseudogene	ChrX:87617030-87617542 (-)
AKR/J	ENSMUSG00220039651	pseudogene	ChrX:82290778-82291290 (-)
AKR/J	ENSMUSG00220033826	protein coding gene	ChrX:82238770-82292376 (-)
BALB/cJ	ENSMUSG00180039490	protein coding gene	ChrX:84241327-84295336 (-)
BALB/cJ	ENSMUSG00180044431	pseudogene	ChrX:84294364-84294876 (-)
BALB/cJ	ENSMUSG00180039486	protein coding gene	ChrX:84240359-84294122 (+)
C3H/HeJ	ENSMUSG00175041080	protein coding gene	ChrX:87813875-87868068 (+)
C3H/HeJ	ENSMUSG00175044758	pseudogene	ChrX:87867220-87867732 (-)
C3H/HeJ	ENSMUSG00175041113	protein coding gene	ChrX:87814198-87868192 (-)
C57BL/6NJ	ENSMUSG00215046199	pseudogene	ChrX:84481449-84481961 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012807	pseudogene	ChrX:97304415-97304927 (-)
CAST/EiJ	ENSTCUG00005043845	pseudogene	ChrX:85349078-85349590 (-)
CBA/J	ENSMUSG00210041084	protein coding gene	ChrX:84706007-84759008 (-)
CBA/J	ENSMUSG00210044618	pseudogene	ChrX:84758036-84758548 (-)
DBA/2J	ENSMUSG00185042761	protein coding gene	ChrX:97151315-97204281 (-)
DBA/2J	ENSMUSG00185042753	protein coding gene	ChrX:97149970-97203351 (+)
DBA/2J	ENSMUSG00185044801	pseudogene	ChrX:97203328-97203840 (-)
FVB/NJ	ENSMUSG00205039723	pseudogene	ChrX:83850631-83851143 (-)
FVB/NJ	ENSMUSG00205022436	protein coding gene	ChrX:83797610-83851603 (-)
JF1/MsJ	ENSUMUG00000041927	pseudogene	ChrX:117753739-117754251 (+)
LP/J	ENSMUSG00230043006	pseudogene	ChrX:103895609-103896121 (-)
NOD/ShiLtJ	ENSMUSG00190045165	pseudogene	ChrX:83915253-83915765 (-)
NZO/HlLtJ	ENSMUSG00225045251	protein coding gene	ChrX:108969025-109116197 (+)
NZO/HlLtJ	ENSMUSG00225046114	pseudogene	ChrX:109023055-109023567 (-)
PWK/PhJ	ENSLUMG00010041349	pseudogene	ChrX:83069230-83069742 (+)
SPRET/EiJ	ENSMSPG00010043355	pseudogene	ChrX:87282423-87282935 (+)
WSB/EiJ	ENSIUOG00005042343	pseudogene	ChrX:84426992-84427504 (-)

Homology

• Gene Tree
  Pabpc1l2a
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086524 (Evidence)
• NCBI Gene
  245545

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086524	Ensembl Gene Model | MGI Sequence Detail	2607	C57BL/6J
transcript	ENSMUST00000128361	Ensembl | MGI Sequence Detail	2607	Not Applicable
polypeptide	ENSMUSP00000160102	Ensembl | MGI Sequence Detail	229	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
  IPR034364 PABP, RNA recognition motif 1
  IPR045305 PABP, RNA recognition motif 2
  IPR035979 RNA-binding domain superfamily
  IPR000504 RNA recognition motif domain

Other
Accession IDs

MGI:6405763

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;