Gm9406 Pseudogene Detail

Summary

• Symbol
  Gm9406
• Name
  predicted gene 9406

• Feature Type
  pseudogene
• IDs
  MGI:3645777
  NCBI Gene: 668866
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:88915298-88915972 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 58.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645777	pseudogene	Chr17:88915298-88915972 (-)
129S1/SvImJ	ENSMUSG00200022566	pseudogene	Chr17:84325529-84326203 (-)
A/J	ENSMUSG00195029989	pseudogene	Chr17:85725233-85725907 (-)
AKR/J	ENSMUSG00220016318	pseudogene	Chr17:84665832-84666506 (-)
BALB/cJ	ENSMUSG00180028210	pseudogene	Chr17:85397301-85397975 (-)
C3H/HeJ	ENSMUSG00175006996	pseudogene	Chr17:84668431-84669105 (-)
C57BL/6NJ	ENSMUSG00215018679	pseudogene	Chr17:84365239-84365913 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011888	pseudogene	Chr17:85245102-85245773 (-)
CBA/J	ENSMUSG00210022351	pseudogene	Chr17:84521742-84522416 (-)
DBA/2J	ENSMUSG00185020978	pseudogene	Chr17:87324706-87325380 (-)
FVB/NJ	ENSMUSG00205006197	pseudogene	Chr17:85142473-85143147 (-)
JF1/MsJ	ENSUMUG00000017658	pseudogene	Chr17:87080572-87081245 (-)
LP/J	ENSMUSG00230010613	pseudogene	Chr17:88367083-88367757 (-)
NOD/ShiLtJ	ENSMUSG00190009528	pseudogene	Chr17:84403783-84404456 (-)
NZO/HlLtJ	ENSMUSG00225031364	pseudogene	Chr17:90611933-90612607 (-)
PWK/PhJ	ENSLUMG00010032295	pseudogene	Chr17:84304641-84305314 (-)
SPRET/EiJ	ENSMSPG00010020325	pseudogene	Chr17:84878021-84878692 (-)
WSB/EiJ	ENSIUOG00005022979	pseudogene	Chr17:85333316-85333990 (-)

Homology

• Gene Tree
  Gm9406
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000117398 (Evidence)
• NCBI Gene
  668866

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117398	Ensembl Gene Model | MGI Sequence Detail	675	C57BL/6J
transcript	ENSMUST00000234525	Ensembl | MGI Sequence Detail	675	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;