Gm8098 Gene Detail

Summary

• Symbol
  Gm8098
• Name
  predicted gene 8098

• Feature Type
  lncRNA gene
• IDs
  MGI:3645749
  NCBI Gene: 666427
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:30217458-30237069 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 17.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  642 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645749	lncRNA gene	Chr11:30216896-30237071 (+)
129S1/SvImJ	ENSMUSG00200010230	lncRNA gene	Chr11:27250891-27263918 (+)
129S1/SvImJ	ENSMUSG00200008858	protein coding gene	Chr11:27250687-27270434 (+)
A/J	ENSMUSG00195014696	lncRNA gene	Chr11:27140588-27153618 (+)
A/J	ENSMUSG00195013854	protein coding gene	Chr11:27140384-27160056 (+)
AKR/J	ENSMUSG00220008784	lncRNA gene	Chr11:27354528-27369314 (+)
BALB/cJ	ENSMUSG00180008122	lncRNA gene	Chr11:27171040-27184065 (+)
BALB/cJ	ENSMUSG00180007628	protein coding gene	Chr11:27170836-27190506 (+)
C3H/HeJ	ENSMUSG00175016030	protein coding gene	Chr11:27172653-27192404 (+)
C3H/HeJ	ENSMUSG00175017282	lncRNA gene	Chr11:27172857-27185888 (+)
C57BL/6NJ	ENSMUSG00215009905	protein coding gene	Chr11:27121938-27141685 (+)
C57BL/6NJ	ENSMUSG00215010608	lncRNA gene	Chr11:27122142-27135169 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013302	unclassified non-coding RNA gene	Chr11:25860233-25874127 (+)
CAST/EiJ	ENSTCUG00005029777	lncRNA gene	Chr11:27032323-27045320 (+)
CBA/J	ENSMUSG00210010204	lncRNA gene	Chr11:27129742-27144528 (+)
DBA/2J	ENSMUSG00185019964	lncRNA gene	Chr11:27226701-27239729 (+)
DBA/2J	ENSMUSG00185018596	protein coding gene	Chr11:27226497-27246167 (+)
FVB/NJ	ENSMUSG00205019153	protein coding gene	Chr11:27213413-27233078 (+)
FVB/NJ	ENSMUSG00205023234	lncRNA gene	Chr11:27213617-27226639 (+)
JF1/MsJ	ENSUMUG00000011614	lncRNA gene	Chr11:27490875-27503902 (+)
LP/J	ENSMUSG00230013567	protein coding gene	Chr11:28389192-28408862 (+)
NOD/ShiLtJ	ENSMUSG00190026173	lncRNA gene	Chr11:27361723-27376509 (+)
NZO/HlLtJ	ENSMUSG00225021917	lncRNA gene	Chr11:30321973-30334326 (+)
PWK/PhJ	ENSLUMG00010017664	lncRNA gene	Chr11:27144983-27158002 (+)
SPRET/EiJ	ENSMSPG00010020321	lncRNA gene	Chr11:27480453-27493471 (+)
WSB/EiJ	ENSIUOG00005013597	lncRNA gene	Chr11:27241289-27254313 (+)

Homology

• Gene Tree
  Gm8098
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm8098
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000073073 (Evidence)
• NCBI Gene
  666427

Representative Sequences			Length	Strain/Species
genomic	666427	NCBI Gene Model | MGI Sequence Detail	19612	C57BL/6J
transcript	NR_168037	RefSeq | MGI Sequence Detail	1674	C57BL/6
polypeptide	Q3UTJ9	UniProt | EBI | MGI Sequence Detail	93	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm8098:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100751	Chr11:30218295-30218336 (+)	858 bp