Gm4891 Pseudogene Detail

Summary

• Symbol
  Gm4891
• Name
  predicted gene 4891

• Feature Type
  pseudogene
• IDs
  MGI:3645744
  NCBI Gene: 234501
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:81660306-81661217 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 38.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645744	pseudogene	Chr8:81660288-81661403 (+)
129S1/SvImJ	ENSMUSG00200026293	pseudogene	Chr8:76023921-76024914 (+)
A/J	ENSMUSG00195019411	pseudogene	Chr8:76370758-76371751 (+)
AKR/J	ENSMUSG00220024424	pseudogene	Chr8:76456890-76457883 (+)
BALB/cJ	ENSMUSG00180021865	pseudogene	Chr8:76222369-76223362 (+)
C3H/HeJ	ENSMUSG00175011481	pseudogene	Chr8:76300848-76301841 (+)
C57BL/6NJ	ENSMUSG00215021777	pseudogene	Chr8:75938695-75939606 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012337	pseudogene	Chr8:72425734-72426733 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210020538	pseudogene	Chr8:76292941-76293934 (+)
DBA/2J	ENSMUSG00185040041	pseudogene	Chr8:82402152-82403145 (+)
FVB/NJ	ENSMUSG00205043819	pseudogene	Chr8:75369976-75370887 (+)
JF1/MsJ	ENSUMUG00000040201	pseudogene	Chr8:84715758-84716527 (+)
LP/J	ENSMUSG00230029991	pseudogene	Chr8:86020956-86021949 (+)
NOD/ShiLtJ	ENSMUSG00190031276	pseudogene	Chr8:76339618-76340611 (+)
NZO/HlLtJ	ENSMUSG00225023370	pseudogene	Chr8:89401026-89402019 (+)
PWK/PhJ	ENSLUMG00010029936	pseudogene	Chr8:76122742-76123653 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005016127	pseudogene	Chr8:77101365-77102358 (+)

Homology

• Gene Tree
  Gm4891
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  32 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm4891
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000098223 (Evidence)
• NCBI Gene
  234501

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098223	Ensembl Gene Model | MGI Sequence Detail	912	C57BL/6J
transcript	ENSMUST00000182279	Ensembl | MGI Sequence Detail	912	Not Applicable

References

• Summaries
  All 37

  Phenotypes 32
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm4891:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78161	Chr8:81660232-81660237 (+)	-71 bp