Gm4887 Pseudogene Detail

Summary

• Symbol
  Gm4887
• Name
  predicted gene 4887

• Feature Type
  pseudogene
• IDs
  MGI:3645730
  NCBI Gene: 233637
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:104470411-104471463 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 55.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645730	pseudogene	Chr7:104470364-104472965 (+)
129S1/SvImJ	ENSMUSG00200050647	pseudogene	Chr7:91229110-91230162 (+)
A/J	ENSMUSG00195054768	pseudogene	Chr7:95731710-95732762 (+)
AKR/J	ENSMUSG00220051355	pseudogene	Chr7:89105734-89106786 (+)
BALB/cJ	ENSMUSG00180044800	pseudogene	Chr7:92411253-92412305 (+)
C3H/HeJ	ENSMUSG00175052508	pseudogene	Chr7:93054301-93055353 (+)
C57BL/6NJ	ENSMUSG00215051516	pseudogene	Chr7:92323726-92324778 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010053	pseudogene	Chr15:88341491-88351604 (-)
CAST/EiJ	ENSTCUG00005053360	pseudogene	Chr7:95697710-95698762 (+)
CBA/J	ENSMUSG00210048018	pseudogene	Chr7:92879818-92880870 (+)
DBA/2J	ENSMUSG00185056922	pseudogene	Chr7:97232220-97233272 (+)
FVB/NJ	ENSMUSG00205048540	pseudogene	Chr7:92865217-92866269 (+)
JF1/MsJ	ENSUMUG00000053251	pseudogene	Chr7:102322645-102323697 (+)
LP/J	ENSMUSG00230048687	pseudogene	Chr7:103333951-103335003 (+)
NOD/ShiLtJ	ENSMUSG00190047769	pseudogene	Chr7:93187440-93188492 (+)
NZO/HlLtJ	ENSMUSG00225017908	pseudogene	Chr7:101531758-101532810 (+)
PWK/PhJ	ENSLUMG00010050533	pseudogene	Chr7:91403872-91404924 (+)
SPRET/EiJ	ENSMSPG00010043962	pseudogene	Chr7:92549412-92550464 (+)
WSB/EiJ	ENSIUOG00005049852	pseudogene	Chr7:93488874-93489926 (+)

Homology

• Gene Tree
  Gm4887
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm4887
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086229 (Evidence)
• NCBI Gene
  233637

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086229	Ensembl Gene Model | MGI Sequence Detail	1053	C57BL/6J
transcript	ENSMUST00000122230	Ensembl | MGI Sequence Detail	1053	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67