Gm5111 MGI Mouse Gene Detail - MGI:3645688

Symbol

Gm5111
Name

predicted gene 5111

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:3645688
NCBI Gene: 330305
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr6:48566379-48567518 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 23.57 cM
Mapping Data

1 experiment

SNPs within 2kb

136 from dbSNP Build 142
Strain Annotations

23

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645688	protein coding gene	Chr6:48566379-48567518 (+)
129S1/SvImJ	ENSMUSG00200005528	lncRNA gene	Chr6:45472005-45473140 (+)
129S1/SvImJ	ENSMUSG00200004024	protein coding gene	Chr6:45472221-45472998 (+)
A/J	ENSMUSG00195006830	lncRNA gene	Chr6:45243081-45244183 (+)
AKR/J	ENSMUSG00220004658	lncRNA gene	Chr6:44952493-44953615 (+)
BALB/cJ	ENSMUSG00180027507	lncRNA gene	Chr6:45555908-45557032 (+)
C3H/HeJ	ENSMUSG00175018702	lncRNA gene	Chr6:45317545-45318667 (+)
C57BL/6NJ	ENSMUSG00215006119	protein coding gene	Chr6:45517270-45518051 (+)
C57BL/6NJ	ENSMUSG00215010791	lncRNA gene	Chr6:45517054-45518193 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028341	protein coding gene	Chr6:43009620-43010713 (+)
CAST/EiJ	ENSTCUG00005005134	lncRNA gene	Chr6:44834443-44835592 (+)
CBA/J	ENSMUSG00210018390	lncRNA gene	Chr6:45362390-45363512 (+)
DBA/2J	ENSMUSG00185014402	lncRNA gene	Chr6:45944083-45945205 (+)
FVB/NJ	ENSMUSG00205035690	lncRNA gene	Chr6:45608537-45609659 (+)
JF1/MsJ	ENSUMUG00000016212	lncRNA gene	Chr6:45307132-45308262 (+)
LP/J	ENSMUSG00230019966	lncRNA gene	Chr6:46969124-46970259 (+)
LP/J	ENSMUSG00230014100	protein coding gene	Chr6:46969340-46970117 (+)
NOD/ShiLtJ	ENSMUSG00190035716	lncRNA gene	Chr6:45282302-45283404 (+)
NZO/HlLtJ	ENSMUSG00225017680	protein coding gene	Chr6:49005875-49006656 (+)
NZO/HlLtJ	ENSMUSG00225019532	lncRNA gene	Chr6:49005659-49006798 (+)
PWK/PhJ	ENSLUMG00010020932	lncRNA gene	Chr6:44941606-44942732 (+)
SPRET/EiJ	ENSMSPG00010010406	lncRNA gene	Chr6:45568160-45569285 (+)
WSB/EiJ	ENSIUOG00005028999	lncRNA gene	Chr6:45580252-45581377 (+)

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Gene Tree

Gm5111

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

3
Targeted

3
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

7 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

2

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

36
RefSeq

2
UniProt

3
CCDS

CCDS51766.1

Ensembl

ENSMUSG00000052730 (Evidence)
NCBI Gene

330305

			Length	Strain/Species	Flank
genomic	330305	NCBI Gene Model \| MGI Sequence Detail	1140	C57BL/6J	± kb
transcript	NM_183309	RefSeq \| MGI Sequence Detail	964	C57BL/6
polypeptide	NP_899132	RefSeq \| MGI Sequence Detail	190	C57BL/6

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UniProt

3 Sequences

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All nucleic 4

Genomic 2

cDNA 2

Microarray probesets 1

Summaries

All 15

Phenotypes 2
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5111:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56139	Chr6:48566384-48566402 (+)	14 bp
Tssr56140	Chr6:48566418-48566433 (+)	47 bp
Tssr56141	Chr6:48566440-48566462 (+)	72 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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