Rps10-ps2 Pseudogene Detail

Summary

• Symbol
  Rps10-ps2
• Name
  ribosomal protein S10, pseudogene 2
• Synonyms
  Gm8017

• Feature Type
  pseudogene
• IDs
  MGI:3645627
  NCBI Gene: 666274
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:20640895-20641390 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 12.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645627	pseudogene	Chr16:20640852-20641428 (-)
129S1/SvImJ	ENSMUSG00200047752	pseudogene	Chr16:17638384-17638879 (-)
A/J	ENSMUSG00195035905	pseudogene	Chr16:17196591-17197086 (-)
AKR/J	ENSMUSG00220046545	pseudogene	Chr16:17513627-17514122 (-)
BALB/cJ	ENSMUSG00180043002	pseudogene	Chr16:17437212-17437707 (-)
C3H/HeJ	ENSMUSG00175051657	pseudogene	Chr16:17582278-17582773 (-)
C57BL/6NJ	ENSMUSG00215041942	pseudogene	Chr16:17303207-17303702 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003652	pseudogene	Chr5:19567159-19567654 (-)
CAST/EiJ	ENSTCUG00005041222	pseudogene	Chr11:8581860-8582354 (+)
CAST/EiJ	ENSTCUG00005046577	pseudogene	Chr16:17910030-17910525 (-)
CBA/J	ENSMUSG00210048571	pseudogene	Chr16:17604006-17604501 (-)
DBA/2J	ENSMUSG00185036336	pseudogene	Chr16:17542755-17543250 (-)
DBA/2J	ENSMUSG00185056960	pseudogene	Chr11:65914357-65914852 (+)
FVB/NJ	ENSMUSG00205047630	pseudogene	Chr16:17545568-17546063 (-)
JF1/MsJ	ENSUMUG00000057366	pseudogene	Chr11:66312429-66312924 (+)
JF1/MsJ	ENSUMUG00000053122	pseudogene	Chr3:94325347-94325842 (-)
JF1/MsJ	ENSUMUG00000053666	pseudogene	Chr16:17735345-17735841 (-)
LP/J	ENSMUSG00230033594	pseudogene	Chr16:20122000-20122495 (-)
NOD/ShiLtJ	ENSMUSG00190050858	pseudogene	Chr16:17684267-17684762 (-)
NZO/HlLtJ	ENSMUSG00225038919	pseudogene	Chr16:23373064-23373559 (-)
PWK/PhJ	ENSLUMG00010050566	pseudogene	Chr16:17561517-17562013 (-)
PWK/PhJ	ENSLUMG00010033534	pseudogene	Chr3:94319298-94319793 (-)
PWK/PhJ	ENSLUMG00010053736	pseudogene	Chr11:65822732-65823227 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005045052	pseudogene	Chr16:17777565-17778060 (-)

Homology

• Gene Tree
  Rps10-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000099764 (Evidence)
• NCBI Gene
  666274

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099764	Ensembl Gene Model | MGI Sequence Detail	496	C57BL/6J
transcript	ENSMUST00000127484	Ensembl | MGI Sequence Detail	496	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rps10-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140409	Chr16:20641637-20641643 (-)	-250 bp
Tssr140408	Chr16:20641426-20641430 (-)	-38 bp