Trav13n-3 Gene Detail

Summary

• Symbol
  Trav13n-3
• Name
  T cell receptor alpha variable 13N-3

• Feature Type
  gene segment
• IDs
  MGI:3645598
  NCBI Gene: 547328
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53574579-53575096 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645598	gene segment	Chr14:53574579-53575096 (+)
129S1/SvImJ	ENSMUSG00200042251	gene segment	Chr14:42511645-42512159 (+)
A/J	ENSMUSG00195035896	gene segment	Chr14:42306822-42307336 (+)
AKR/J	ENSMUSG00220034459	gene segment	Chr14:41544172-41544686 (-)
BALB/cJ	ENSMUSG00180052747	gene segment	Chr14:41929280-41929794 (+)
C3H/HeJ	ENSMUSG00175049700	gene segment	Chr14:43611750-43612264 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050422	gene segment	Chr14:44089987-44090498 (+)
CBA/J	ENSMUSG00210049407	gene segment	Chr14:42284986-42285500 (+)
DBA/2J	ENSMUSG00185056269	gene segment	Chr14:47504027-47504541 (+)
DBA/2J	ENSMUSG00185056271	gene segment	Chr14:47784829-47785343 (+)
FVB/NJ	ENSMUSG00205045693	gene segment	Chr14:41629500-41630014 (+)
FVB/NJ	ENSMUSG00205045720	gene segment	Chr14:42149652-42150166 (+)
JF1/MsJ	ENSUMUG00000051832	gene segment	Chr14:59068572-59069074 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050529	gene segment	Chr14:42491234-42491748 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010051439	gene segment	Chr14:41498057-41498571 (+)
SPRET/EiJ	ENSMSPG00010046707	gene segment	Chr14:45352798-45353312 (+)
WSB/EiJ	ENSIUOG00005044846	gene segment	Chr14:41668576-41669090 (+)

Homology

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV22, T cell receptor alpha variable 22
  
• Synonyms
  TCRAV13S1, TCRAV22S1
• Links
  HGNC:12119

  NCBI Gene ID: 28661

  UniProt: A0A0B4J277

  
  
• Chr Location
  14q11.2; chr14:22070557-22071208 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav13n-3 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAV22
• Gene Tree
  Trav13n-3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096038 (Evidence)
• NCBI Gene
  547328

Representative Sequences			Length	Strain/Species
genomic	547328	NCBI Gene Model | MGI Sequence Detail	518	C57BL/6J
polypeptide	J3QMG8	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051896 T cell receptor alpha variable region

References

• Summaries
  All 7
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61