Gm8420 Pseudogene Detail

Summary

• Symbol
  Gm8420
• Name
  predicted gene 8420

• Feature Type
  pseudogene
• IDs
  MGI:3645594
  NCBI Gene: 667014
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:51979823-51980420 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 26.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645594	pseudogene	Chr1:51979823-51980458 (-)
129S1/SvImJ	ENSMUSG00200002182	pseudogene	Chr1:49453754-49454427 (-)
A/J	ENSMUSG00195001935	pseudogene	Chr1:49351115-49351712 (-)
AKR/J	ENSMUSG00220003612	pseudogene	Chr1:49111013-49111689 (-)
BALB/cJ	ENSMUSG00180003186	pseudogene	Chr1:49286605-49287281 (-)
C3H/HeJ	ENSMUSG00175000172	pseudogene	Chr1:49380635-49381232 (-)
C57BL/6NJ	ENSMUSG00215003128	pseudogene	Chr1:49307808-49308405 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009099	pseudogene	Chr1:42133202-42133797 (+)
CAST/EiJ	ENSTCUG00005001076	pseudogene	Chr1:49214734-49215328 (-)
CBA/J	ENSMUSG00210029540	pseudogene	Chr1:49085752-49086349 (-)
DBA/2J	ENSMUSG00185031071	pseudogene	Chr1:50205375-50205972 (-)
FVB/NJ	ENSMUSG00205003889	pseudogene	Chr1:49031045-49031642 (-)
JF1/MsJ	ENSUMUG00000002949	pseudogene	Chr1:49184744-49185419 (-)
LP/J	ENSMUSG00230001120	pseudogene	Chr1:50201871-50202468 (-)
NOD/ShiLtJ	ENSMUSG00190002687	pseudogene	Chr1:49216966-49217639 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010002673	pseudogene	Chr1:48720810-48721406 (-)
SPRET/EiJ	ENSMSPG00010013184	pseudogene	Chr1:50413571-50414175 (-)
WSB/EiJ	ENSIUOG00005003745	pseudogene	Chr1:48919107-48919704 (-)

Homology

• Gene Tree
  Gm8420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm8420
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000072324 (Evidence)
• NCBI Gene
  667014

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072324	Ensembl Gene Model | MGI Sequence Detail	598	C57BL/6J
transcript	ENSMUST00000097103	Ensembl | MGI Sequence Detail	598	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8420:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11588	Chr1:51980448-51980461 (-)	-35 bp