Phf2os1 Gene Detail

Summary

• Symbol
  Phf2os1
• Name
  PHD finger protein 2, opposite strand 1
• Synonyms
  Gm8619

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3645592
  NCBI Gene: 102642832
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:49024588-49028936 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 24.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  18 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645592	antisense lncRNA gene	Chr13:49024588-49029182 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003187	antisense lncRNA gene	Chr13:47813047-47817408 (+)
A/J	MGP_AJ_G0003161	antisense lncRNA gene	Chr13:46119540-46123888 (+)
AKR/J	MGP_AKRJ_G0003143	antisense lncRNA gene	Chr13:47416572-47420956 (+)
BALB/cJ	MGP_BALBcJ_G0003149	antisense lncRNA gene	Chr13:46335621-46339988 (+)
C3H/HeJ	MGP_C3HHeJ_G0003105	antisense lncRNA gene	Chr13:47243354-47247714 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003293	antisense lncRNA gene	Chr13:49255117-49259467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002821	antisense lncRNA gene	Chr13:44111130-44115729 (+)
CAST/EiJ	MGP_CASTEiJ_G0003073	antisense lncRNA gene	Chr13:47250170-47254582 (+)
CBA/J	MGP_CBAJ_G0003101	antisense lncRNA gene	Chr13:51301594-51305934 (+)
DBA/2J	MGP_DBA2J_G0003107	antisense lncRNA gene	Chr13:45647483-45651824 (+)
FVB/NJ	MGP_FVBNJ_G0003125	antisense lncRNA gene	Chr13:45160116-45164462 (+)
LP/J	MGP_LPJ_G0003182	antisense lncRNA gene	Chr13:48035885-48040286 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003115	antisense lncRNA gene	Chr13:51030292-51035660 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003293	antisense lncRNA gene	Chr13:47122535-47126876 (+)
PWK/PhJ	MGP_PWKPhJ_G0003031	antisense lncRNA gene	Chr13:45814627-45819052 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002976	antisense lncRNA gene	Chr13:45827915-45832275 (+)
WSB/EiJ	MGP_WSBEiJ_G0003105	antisense lncRNA gene	Chr13:47431358-47435749 (+)

Homology

• Gene Tree
  Phf2os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving Phf2os1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000086889 (Evidence)
• NCBI Gene
  102642832

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086889	Ensembl Gene Model | MGI Sequence Detail	4349	C57BL/6J
transcript	ENSMUST00000123212	Ensembl | MGI Sequence Detail	498	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:137511 Lin Q, et al., Mutagenesis of diploid mammalian genes by gene entrapment. Nucleic Acids Res. 2006;34(20):e139

TSS for Phf2os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119669	Chr13:49023526-49023542 (+)	-1,054 bp
Tssr119670	Chr13:49023550-49023567 (+)	-1,029 bp