Gm6048 Pseudogene Detail

Summary

• Symbol
  Gm6048
• Name
  predicted gene 6048

• Feature Type
  pseudogene
• IDs
  MGI:3645583
  NCBI Gene: 606511
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:17543240-17543549 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645583	pseudogene	Chr16:17543240-17543841 (+)
129S1/SvImJ	ENSMUSG00200047156	pseudogene	Chr16:14539809-14540118 (+)
A/J	ENSMUSG00195034933	pseudogene	Chr16:14097103-14097412 (+)
AKR/J	ENSMUSG00220045569	pseudogene	Chr16:14413362-14413671 (+)
BALB/cJ	ENSMUSG00180041456	pseudogene	Chr16:14338332-14338641 (+)
C3H/HeJ	ENSMUSG00175050699	pseudogene	Chr16:14483347-14483656 (+)
C57BL/6NJ	ENSMUSG00215043297	pseudogene	Chr16:14204439-14204748 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046240	pseudogene	Chr16:14412269-14412578 (+)
CBA/J	ENSMUSG00210048477	pseudogene	Chr16:14499660-14499969 (+)
DBA/2J	ENSMUSG00185035640	pseudogene	Chr16:14445811-14446120 (+)
FVB/NJ	ENSMUSG00205048498	pseudogene	Chr16:14453435-14453744 (+)
JF1/MsJ	ENSUMUG00000053829	pseudogene	Chr16:14528377-14528686 (+)
LP/J	ENSMUSG00230045890	pseudogene	Chr16:17023706-17024015 (+)
NOD/ShiLtJ	ENSMUSG00190050634	pseudogene	Chr16:14585703-14586012 (+)
NZO/HlLtJ	ENSMUSG00225032230	pseudogene	Chr16:20269514-20269823 (+)
PWK/PhJ	ENSLUMG00010049918	pseudogene	Chr16:14411169-14411478 (+)
SPRET/EiJ	ENSMSPG00010047625	pseudogene	Chr16:14428380-14428689 (+)
WSB/EiJ	ENSIUOG00005044501	pseudogene	Chr16:14579816-14580125 (+)

Homology

• Gene Tree
  Gm6048
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116783 (Evidence)
• NCBI Gene
  606511

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116783	Ensembl Gene Model | MGI Sequence Detail	310	C57BL/6J
transcript	ENSMUST00000232388	Ensembl | MGI Sequence Detail	310	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;