Gm5316 Pseudogene Detail

Summary

• Symbol
  Gm5316
• Name
  predicted gene 5316

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645576
  NCBI Gene: 102634348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:122877095-122877364 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 57.99 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645576	pseudogene	Chr6:122876970-122877364 (-)
129S1/SvImJ	ENSMUSG00200051322	pseudogene	Chr6:120053106-120056201 (-)
A/J	ENSMUSG00195047887	pseudogene	Chr6:119510828-119513923 (-)
AKR/J	ENSMUSG00220035363	pseudogene	Chr6:118354110-118357205 (-)
BALB/cJ	ENSMUSG00180049592	pseudogene	Chr6:119841836-119844932 (-)
C3H/HeJ	ENSMUSG00175050787	pseudogene	Chr6:119505796-119508891 (-)
C57BL/6NJ	ENSMUSG00215048216	pseudogene	Chr6:119855627-119858722 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036930	pseudogene	ChrX:147864222-147864475 (-)
CAST/EiJ	ENSTCUG00005051071	pseudogene	Chr6:119537458-119540553 (-)
CBA/J	ENSMUSG00210046837	pseudogene	Chr6:119608298-119611393 (-)
DBA/2J	ENSMUSG00185050330	pseudogene	Chr6:120249657-120252752 (-)
FVB/NJ	ENSMUSG00205051105	pseudogene	Chr6:118537690-118540785 (-)
JF1/MsJ	ENSUMUG00000054413	pseudogene	Chr6:118865473-118868568 (-)
LP/J	ENSMUSG00230048717	pseudogene	Chr6:121445883-121448978 (-)
NOD/ShiLtJ	ENSMUSG00190052592	pseudogene	Chr6:119220938-119224033 (-)
NZO/HlLtJ	ENSMUSG00225017596	pseudogene	Chr6:123345443-123348538 (-)
PWK/PhJ	ENSLUMG00010049385	pseudogene	Chr6:118174511-118177606 (-)
SPRET/EiJ	ENSMSPG00010045755	pseudogene	Chr6:120642553-120645663 (-)
WSB/EiJ	ENSIUOG00005046096	pseudogene	Chr6:119856755-119859851 (-)

Homology

• Gene Tree
  Gm5316
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000049249 (Evidence)
• NCBI Gene
  102634348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049249	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000050391	Ensembl | MGI Sequence Detail	270	Not Applicable
polypeptide	XP_036008361	RefSeq | MGI Sequence Detail	89	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;