Spin2-ps4 Pseudogene Detail

Summary

• Symbol
  Spin2-ps4
• Name
  spindlin family, member 2, pseudogene 4
• Synonyms
  Gm16388

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645574
  NCBI Gene: 100041642
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:73933269-73933979 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 38.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  23

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645574	pseudogene	ChrX:73933218-73935046 (-)
129S1/SvImJ	ENSMUSG00200042934	pseudogene	ChrX:55865659-55866420 (+)
129S1/SvImJ	ENSMUSG00200040601	protein coding gene	ChrX:55864704-55866624 (+)
A/J	ENSMUSG00195030583	protein coding gene	ChrX:59661087-59662852 (-)
A/J	ENSMUSG00195036032	pseudogene	ChrX:59661164-59661925 (-)
AKR/J	ENSMUSG00220041797	protein coding gene	ChrX:54811505-54813405 (-)
AKR/J	ENSMUSG00220047822	pseudogene	ChrX:54811709-54812470 (-)
BALB/cJ	ENSMUSG00180050878	pseudogene	ChrX:56235893-56236654 (-)
BALB/cJ	ENSMUSG00180047880	protein coding gene	ChrX:56235689-56237516 (-)
C3H/HeJ	ENSMUSG00175035358	pseudogene	ChrX:59826379-59827140 (-)
C3H/HeJ	ENSMUSG00175033714	protein coding gene	ChrX:59826175-59828075 (-)
C57BL/6NJ	ENSMUSG00215043008	pseudogene	ChrX:56334734-56335501 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210045988	pseudogene	ChrX:56506208-56506969 (-)
CBA/J	ENSMUSG00210041733	protein coding gene	ChrX:56506004-56507896 (-)
DBA/2J	ENSMUSG00185031544	protein coding gene	ChrX:68723994-68725711 (-)
DBA/2J	ENSMUSG00185036398	pseudogene	ChrX:68927952-68928713 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230010477	pseudogene	Chr13:8784808-8785575 (-)
LP/J	ENSMUSG00230034621	protein coding gene	ChrX:75303267-75304984 (-)
LP/J	ENSMUSG00230036799	pseudogene	ChrX:75507255-75508016 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225048856	pseudogene	ChrX:80711274-80712035 (-)
NZO/HlLtJ	ENSMUSG00225048711	protein coding gene	ChrX:80711244-80712763 (-)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010040277	pseudogene	ChrX:56898276-56899215 (+)
SPRET/EiJ	ENSMSPG00010040308	pseudogene	ChrX:56871413-56871842 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Spin2-ps4
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085877 (Evidence)
• NCBI Gene
  100041642

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085877	Ensembl Gene Model | MGI Sequence Detail	711	C57BL/6J
transcript	ENSMUST00000126395	Ensembl | MGI Sequence Detail	711	Not Applicable
polypeptide	ENSMUSP00000160075	Ensembl | MGI Sequence Detail	236	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR042567 Spindlin/spermiogenesis-specific domain superfamily
  IPR003671 Spindlin/spermiogenesis-specific protein

References

• Summaries
  All 6

  Gene Ontology 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;