Gm6501 Pseudogene Detail

Summary

• Symbol
  Gm6501
• Name
  predicted gene 6501

• Feature Type
  pseudogene
• IDs
  MGI:3645570
  NCBI Gene: 624395
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:11098874-11099789 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 7.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645570	pseudogene	Chr19:11098708-11099789 (+)
129S1/SvImJ	ENSMUSG00200052940	pseudogene	Chr19:7777977-7778892 (+)
A/J	ENSMUSG00195053923	pseudogene	Chr19:7990966-7991881 (+)
AKR/J	ENSMUSG00220051554	pseudogene	Chr19:7898893-7899808 (+)
BALB/cJ	ENSMUSG00180052068	pseudogene	Chr19:8352727-8353642 (+)
C3H/HeJ	ENSMUSG00175015637	pseudogene	Chr19:7623698-7624613 (+)
C57BL/6NJ	ENSMUSG00215048358	pseudogene	Chr19:7695296-7696211 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210050559	pseudogene	Chr19:7822246-7823161 (+)
DBA/2J	ENSMUSG00185053572	pseudogene	Chr19:8232007-8232922 (+)
FVB/NJ	ENSMUSG00205053253	pseudogene	Chr19:7706746-7706826 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230054274	pseudogene	Chr19:9152597-9153512 (+)
NOD/ShiLtJ	ENSMUSG00190053109	pseudogene	Chr19:7450534-7451449 (+)
NZO/HlLtJ	ENSMUSG00225047369	pseudogene	Chr19:12861535-12862450 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051500	pseudogene	Chr19:7350441-7351356 (+)

Homology

• Gene Tree
  Gm6501
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm6501
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000099998 (Evidence)
• NCBI Gene
  624395

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099998	Ensembl Gene Model | MGI Sequence Detail	916	C57BL/6J
transcript	ENSMUST00000187178	Ensembl | MGI Sequence Detail	916	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm6501:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155154	Chr19:11098715-11098734 (+)	-149 bp
Tssr155155	Chr19:11098747-11098775 (+)	-113 bp