Gm9396 Pseudogene Detail

Summary

• Symbol
  Gm9396
• Name
  predicted gene 9396

• Feature Type
  pseudogene
• IDs
  MGI:3645563
  NCBI Gene: 668844
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:129862061-129862627 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 59.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645563	pseudogene	Chr3:129862042-129862670 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195008598	pseudogene	Chr3:126749547-126750113 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180003894	pseudogene	Chr3:126678243-126678809 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215027738	pseudogene	Chr3:127011356-127011922 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004035	pseudogene	Chr3:127332146-127332359 (+)
CBA/J	ENSMUSG00210004331	pseudogene	Chr3:126853194-126853760 (+)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010013968	pseudogene	Chr3:127205127-127205356 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9396
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm9396
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000063328 (Evidence)
• NCBI Gene
  668844

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000063328	Ensembl Gene Model | MGI Sequence Detail	567	C57BL/6J
transcript	ENSMUST00000076703	Ensembl | MGI Sequence Detail	567	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31666	Chr3:129862039-129862040 (+)	-21 bp