Sox1ot MGI Mouse Gene Detail - MGI:3645522 - Sox1 overlapping transcript

Sequence Map

Chr8:12435771-12486732 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645522	sense overlapping lncRNA gene	Chr8:12435771-12486768 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037118	sense overlapping lncRNA gene	Chr8:9676104-9732368 (+)
A/J	MGP_AJ_G0037105	sense overlapping lncRNA gene	Chr8:9326218-9377700 (+)
AKR/J	MGP_AKRJ_G0037053	sense overlapping lncRNA gene	Chr8:9582697-9633619 (+)
BALB/cJ	MGP_BALBcJ_G0037096	sense overlapping lncRNA gene	Chr8:9465071-9516553 (+)
C3H/HeJ	MGP_C3HHeJ_G0036783	sense overlapping lncRNA gene	Chr8:9773984-9826976 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037610	sense overlapping lncRNA gene	Chr8:10029507-10083688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034653	sense overlapping lncRNA gene	Chr8:8827287-8880016 (+)
CAST/EiJ	MGP_CASTEiJ_G0035970	sense overlapping lncRNA gene	Chr8:9528192-9581002 (+)
CBA/J	MGP_CBAJ_G0036758	sense overlapping lncRNA gene	Chr8:10458229-10515696 (+)
DBA/2J	MGP_DBA2J_G0036933	sense overlapping lncRNA gene	Chr8:9288743-9339719 (+)
FVB/NJ	MGP_FVBNJ_G0036882	sense overlapping lncRNA gene	Chr8:9272424-9323422 (+)
LP/J	MGP_LPJ_G0036980	sense overlapping lncRNA gene	Chr8:9588100-9646011 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036891	sense overlapping lncRNA gene	Chr8:10730492-10788798 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037727	sense overlapping lncRNA gene	Chr8:9625840-9679662 (+)
PWK/PhJ	MGP_PWKPhJ_G0035664	sense overlapping lncRNA gene	Chr8:9302255-9355077 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035470	sense overlapping lncRNA gene	Chr8:9493428-9562265 (+)
WSB/EiJ	MGP_WSBEiJ_G0036172	sense overlapping lncRNA gene	Chr8:9660819-9715272 (+)

Vertebrate Orthology Source

Alliance of Genome Resources

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	434280	NCBI Gene Model \| MGI Sequence Detail	50962	C57BL/6J	± kb
transcript	NR_027975	RefSeq \| MGI Sequence Detail	5092	C57BL/6
polypeptide	Q6NZL2	UniProt \| EBI \| MGI Sequence Detail	217	Not Applicable

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Summaries

All 15

Phenotypes 3
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:241993 Ahmad A, et al., Expression of a SOX1 overlapping transcript in neural differentiation and cancer models. Cell Mol Life Sci. 2017 Nov;74(22):4245-4258

TSS for Sox1ot:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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