Gm4735 Pseudogene Detail

Summary

• Symbol
  Gm4735
• Name
  predicted gene 4735
• Synonyms
  Gm13699

• Feature Type
  pseudogene
• IDs
  MGI:3645521
  NCBI Gene: 103324
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:80667485-80668786 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 48.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645521	pseudogene	Chr2:80667439-80669117 (+)
129S1/SvImJ	ENSMUSG00200004173	pseudogene	Chr2:77711008-77712309 (+)
129S1/SvImJ	ENSMUSG00200005028	pseudogene	Chr8:122781675-122782976 (+)
A/J	ENSMUSG00195021436	pseudogene	Chr2:77893714-77895015 (+)
AKR/J	ENSMUSG00220002571	pseudogene	Chr2:77813096-77814397 (+)
BALB/cJ	ENSMUSG00180006920	pseudogene	Chr2:77821578-77822879 (+)
C3H/HeJ	ENSMUSG00175011221	pseudogene	Chr2:77949161-77950462 (+)
C57BL/6NJ	ENSMUSG00215025748	pseudogene	Chr2:77789871-77791172 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210002422	pseudogene	Chr2:77983363-77984664 (+)
DBA/2J	ENSMUSG00185011655	pseudogene	Chr2:77817832-77819133 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230007774	pseudogene	Chr8:132964094-132965395 (+)
LP/J	ENSMUSG00230027085	pseudogene	Chr2:79623457-79624758 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225003801	pseudogene	Chr2:87381390-87382691 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4735
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm4735
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000064193 (Evidence)
• NCBI Gene
  103324

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000064193	Ensembl Gene Model | MGI Sequence Detail	1302	C57BL/6J
transcript	ENSMUST00000138679	Ensembl | MGI Sequence Detail	1302	Not Applicable

Other
Accession IDs

MGI:3651585

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm4735:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18631	Chr2:80667427-80667438 (+)	-52 bp