Gm5865 Pseudogene Detail

Summary

• Symbol
  Gm5865
• Name
  predicted gene 5865

• Feature Type
  pseudogene
• IDs
  MGI:3645504
  NCBI Gene: 545747
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:44563299-44563935 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 24.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645504	pseudogene	Chr5:44563139-44564084 (-)
129S1/SvImJ	ENSMUSG00200033716	pseudogene	Chr5:40073372-40074008 (-)
A/J	ENSMUSG00195030622	pseudogene	Chr5:39463538-39464174 (-)
AKR/J	ENSMUSG00220002418	pseudogene	Chr5:39501004-39501640 (-)
BALB/cJ	ENSMUSG00180024928	pseudogene	Chr5:39291068-39291704 (-)
C3H/HeJ	ENSMUSG00175015853	pseudogene	Chr5:41264563-41265199 (-)
C57BL/6NJ	ENSMUSG00215006809	pseudogene	Chr5:40014799-40015435 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011588	pseudogene	Chr5:38780095-38780709 (-)
CAST/EiJ	ENSTCUG00005025358	pseudogene	Chr5:39393364-39394000 (-)
CBA/J	ENSMUSG00210005205	pseudogene	Chr5:40224269-40224905 (-)
DBA/2J	ENSMUSG00185001796	pseudogene	Chr5:42102477-42103113 (-)
FVB/NJ	ENSMUSG00205021499	pseudogene	Chr5:39012449-39013085 (-)
JF1/MsJ	ENSUMUG00000003096	pseudogene	Chr5:46670969-46671605 (-)
LP/J	ENSMUSG00230002572	pseudogene	Chr5:46758043-46758679 (-)
NOD/ShiLtJ	ENSMUSG00190003336	pseudogene	Chr5:39299025-39299661 (-)
NZO/HlLtJ	ENSMUSG00225028574	pseudogene	Chr5:51901660-51902296 (-)
PWK/PhJ	ENSLUMG00010023252	pseudogene	Chr5:39333850-39334485 (-)
SPRET/EiJ	ENSMSPG00010012855	pseudogene	Chr5:40629719-40630342 (-)
WSB/EiJ	ENSIUOG00005019223	pseudogene	Chr5:42176170-42176806 (-)

Homology

• Gene Tree
  Gm5865
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm5865
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104923 (Evidence)
• NCBI Gene
  545747

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104923	Ensembl Gene Model | MGI Sequence Detail	637	C57BL/6J
transcript	ENSMUST00000198713	Ensembl | MGI Sequence Detail	637	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm5865:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50891	Chr5:44563686-44563694 (-)	245 bp