Gm5145 Pseudogene Detail

Summary

• Symbol
  Gm5145
• Name
  predicted pseudogene 5145

• Feature Type
  pseudogene
• IDs
  MGI:3645482
  NCBI Gene: 381065
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:20790631-20791460 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645482	pseudogene	Chr17:20790442-20791661 (+)
129S1/SvImJ	ENSMUSG00200038843	pseudogene	Chr17:16266484-16267313 (+)
A/J	ENSMUSG00195038062	pseudogene	Chr17:17154396-17155225 (+)
AKR/J	ENSMUSG00220027563	pseudogene	Chr17:16457159-16457988 (+)
BALB/cJ	ENSMUSG00180019230	pseudogene	Chr17:16451129-16451958 (+)
C3H/HeJ	ENSMUSG00175043818	pseudogene	Chr17:16305615-16306444 (+)
C57BL/6NJ	ENSMUSG00215042881	pseudogene	Chr17:16259635-16260464 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023122	pseudogene	Chr17:16906654-16907483 (+)
CBA/J	ENSMUSG00210042382	pseudogene	Chr17:16113529-16114358 (+)
DBA/2J	ENSMUSG00185040787	pseudogene	Chr17:18288512-18289341 (+)
FVB/NJ	ENSMUSG00205033279	pseudogene	Chr17:16850590-16851419 (+)
JF1/MsJ	ENSUMUG00000038049	pseudogene	Chr17:17515076-17515905 (+)
LP/J	ENSMUSG00230027202	pseudogene	Chr17:19686544-19687373 (+)
NOD/ShiLtJ	ENSMUSG00190042351	pseudogene	Chr17:16477418-16478247 (+)
NZO/HlLtJ	ENSMUSG00225054764	pseudogene	Chr17:21640236-21641065 (+)
PWK/PhJ	ENSLUMG00010021944	pseudogene	Chr17:15807837-15808665 (+)
SPRET/EiJ	ENSMSPG00010041698	pseudogene	Chr17:17038508-17039343 (+)
WSB/EiJ	ENSIUOG00005040885	pseudogene	Chr17:17055986-17056815 (+)

Homology

• Gene Tree
  Gm5145
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5145
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000071273 (Evidence)
• NCBI Gene
  381065

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000071273	Ensembl Gene Model | MGI Sequence Detail	830	C57BL/6J
transcript	ENSMUST00000095633	Ensembl | MGI Sequence Detail	830	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 22

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964