Gm8289 Pseudogene Detail

Summary

• Symbol
  Gm8289
• Name
  predicted gene 8289

• Feature Type
  pseudogene
• IDs
  MGI:3645453
  NCBI Gene: 666789
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:146525078-146530604 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645453	pseudogene	ChrX:146525078-146547010 (+)
129S1/SvImJ	ENSMUSG00200034078	pseudogene	ChrX:125541844-125563685 (+)
A/J	ENSMUSG00195021577	pseudogene	ChrX:129375916-129397769 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180040872	pseudogene	ChrX:125814987-125843986 (+)
C3H/HeJ	ENSMUSG00175030310	pseudogene	ChrX:129710824-129732667 (+)
C57BL/6NJ	ENSMUSG00215029294	pseudogene	ChrX:126307242-126329085 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037834	pseudogene	ChrX:126833299-126855233 (+)
CBA/J	ENSMUSG00210034295	pseudogene	ChrX:126623542-126645383 (+)
DBA/2J	ENSMUSG00185035186	pseudogene	ChrX:140514537-140536383 (+)
FVB/NJ	ENSMUSG00205027182	pseudogene	ChrX:125014464-125036287 (+)
JF1/MsJ	ENSUMUG00000031732	pseudogene	ChrX:159765924-159787756 (+)
LP/J	ENSMUSG00230033328	pseudogene	ChrX:148276478-148298318 (+)
NOD/ShiLtJ	ENSMUSG00190038174	pseudogene	ChrX:126039460-126061301 (+)
NZO/HlLtJ	ENSMUSG00225043311	pseudogene	ChrX:151868603-151890450 (+)
PWK/PhJ	ENSLUMG00010033765	pseudogene	ChrX:124428113-124449909 (+)
SPRET/EiJ	ENSMSPG00010041618	pseudogene	ChrX:129191158-129211759 (+)
WSB/EiJ	ENSIUOG00005042174	pseudogene	ChrX:126675323-126697174 (+)

Homology

• Gene Tree
  Gm8289
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085441 (Evidence)
• NCBI Gene
  666789

Representative Sequences			Length	Strain/Species
genomic	666789	NCBI Gene Model | MGI Sequence Detail	5527	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;